Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2231 ATGAACATGGGGAGAACACTTGCACAGTACAGTGCAGACGCTGAGATTCTTGCAGAGTTCGAGCAATCAAACGTGTCCGGTAAATCATTTGACTACTCAAAGTCAGTGGTTGACCCACCGAAATCAGTCTCTGAGGAGAAGATGACTGCCTACTTGTCAAGAATCCAAAGGGGCGGACTCATCCAGCCCTTTGGCTGCATGCTGGCAGTCGAAGAACCGACTTTCAACATCATTGGCTACAGCCAGAATTCATTTCACCTCTTGGGTGTCAAGACTCAGTCCGACACCGAAGAGTTAATGGGTGGTCTTCTTGGAGTTGATGCCACTACACTCTTCACTCCTGCTTCCGGGGCTTCGCTTGCGAAAGCTGTGGCATCGAGGGAAATCTCGCTTCTTAATCCTGTTTGGGTGTACGCAAGGGCAACACAGAAGCCGTTTTACGCGATACTTCACCGGATTGATGTCGGAGTTGTGATAGATTTGGAACCTGCAAGGTCTAGTGACCCTGCATTGTCGTTCGCAGGAGCGGTTCAGTCGCAGAAGCTAGCCGTTAGAGCGATTTCTCGGCTGCAATCGCTTCCCGGCGGAGACATTGGTCTTCTGTGTGACTCTGTTGTAGGGGAAGTTCAAAAGCTTACCGGATATGACAGAGTTATGGTGTATAAATTCCACGAGGACGATCACGGGGAGGTTGTTTCGGAGATTAGGAGGTTGGATTTGGAGTCTTATTTGGGCCTGCACTACCCTGCCACTGATATCCCTCAAGCCTCAAGATTCTTGTTCAGGCAAAATCGCGTTCGGATGATTTGTGATTGTAATGCTAAGCCGGTTAAGGTAACTCAGAACCAAGAGTTGAGTCAACCACTTTGCTTGGTGAACTCAACTCTGAGGGCGCCACATGGTTGTCACACGCAGTACATGGCTAACATGGGCTCCATTGCTTCTCTGGTTATGTCAATTGTGGTAAATACCAAAGATTCCATGAAGCTATGGGGTTTGCTAGTGTGCCATCACACTGCGCCGCGCTATGTGCCTTTTCCGGTTCGCTACGCTTGTGAATTTCTTATGCAGGCTTTTGGAGTGCAGCTTTACATGGAGATTCAGTTAGCAGCGCAAATGGCAGAGAAAAGGATTCTCAAGACACAAACTTTGCTGTGTGACATGCTCCTTCGCGACGCGCCGTTTGGGATTGTTACTCAGTCTCCTAATATCAAGGATCTTGTCAAGTGTGATGGGGCTGCCCTGTATTATGATGGGAACTGTTGGTTGTTAGGCACAACGCCGTCGGAATCACAGGTAAAAGACATTGCTGAATGGTTGCTTAGTACTCACGGTGACTCGACCGGTTTGAGTACAGACAGTTTGGCTGATGCTGGTTATCCTGGGGCTGTTTTACTTGGGGATGCAGTGTGTGGCATGGCGATGGCGCGAATCAGTTCGAGGCATTTCTTGTTCTGGTTCCGATCTCACACTGCTAAGGAAGTTAAGTGGGGAGGGGCCAAACACCATCCTGAGGATAAGGATGATGGAAGGAAAATGAATCCAAGATCATCATTCAAAGCATTTCTTGAAGTTGTTAAGAGCAAAAGTTCGCCTTGGGAGGCTTCCGAAATCAATGCTATTCACTCATTGCAACTTATAATTAGAGATTCATTTCACAATTCAGAGAATAGTGGTATTAAGGCTATGAACTACATACAGAGAAGTGATGCTTCAAGTGGTGGGATTGATGAGCTAAGTTCAGTAGCATTTGAAATGGTGAGGTTAATTGAGACGGCAACTGTGCCGATTTTCGGGGTTGACACAGGTGGCCTAATCAATGGTTGGAATGTGAAAATTGCGGAATTGACAGGTTTGCTGGCAAATGAAGCTATTGGAAAATCACTAGTGAATGAAGTAGCGCATGCAGACTCGCGCAACAATCTTGAAAATATTCAAAGTAAAGCCCTGCAAGGCTTAGAAGACAAGAATTTTGAGTTGAAATTGAAACATTTTGGGAATCAACAAGAAAATGGAGTTGTATATCTCATAGTGAATGCTTGCACAAGTAGAGATTACACAAATGCTGTTGTTGGGGTATGCTTTGTAGGCCAAGATATCACTTGTGAGAAAGTTGTTCTGGACAAATTTGTCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAATCCGCTGATTCCGCCGATATTTGCTTCTGACGAGAGCGCCTGCTGCTCCGAATGGAATGCAGCCATGGAAAGGATAACTGGCTGGAAGAGAGACGAAGTCATAGGAAAACTTCTTCCCGGGGAAATCTTTGGAAGCTTTGTTAGACTGAAAGGTCAAGATACACTGACTAACTTCATGATCTTGCTTTACCGGGGAATTAGCGGACAAGAATTCGAGAAGTTTCCCTTCGGATTTTTTGATAGGAACGGAGAGTTTATAGAGGCTTACATCACTGCTAACAAGAGGATCGATACGAGTGGGAACATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCTCGCGATCCGAATCAGCCTTCGGATGGACAAAATCTTCCTCAAGGGAGGAAGAGTATATCTGAGTCTAAGGAGTTTGCTTATATATTACAAGAGATGATGAATCCTTTAAACGGTATTCGGTTTACGCATAAGCTTCTGGAGAAAACAGCTGTCTCAGAAAGCCAGAAACAGTTTCTTGACACTAGTGCTGCTTGTGAAAGACAGATAATGGCAATTATTGAGGAAACATACATAGGAAGTATCAATGAAGGCAGTGTGCAGCTAAACATGGAGGAATTTCTTCTTGGGAGTATTCTAGATGCCATTGTGAGTCAAGTGATGCTGTTGGTGAGAGGAAAAAGCTTGCAGCTGTTTCATGAAATTCCTGATGAAATGAAAACTCTTGCTCTGTATGGTGATCAAATAAAGCTTCAAGTGGTCTTATCTGACATTCTGCTTAATGTAGTCAACTATACACCATCTCCAAATGGCTGGGTTGAAATCAAGATTTCACCTGGTTTGAAGATAATTCAGGACGGCCATGAGTTTATCCATTTGAAGTTCAGAATGAGCCATTCCGGTCAAGGTCTTCCTTCTAACACACTTCAGGATATGTTTGAAGAAGGGACTCAATGGACTACACAAGAAGGTTTAGGGCTATATATGTCAAGAAAAATGCTTAGTAGGATGAATGGTCATGTTCACTATGCGAGAGAACAAAATAAGTGCTACTTCCTCATTGATCTTGAACTTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCAAGCGGAGACAAGCATGTTGAGTTAA 3303 0.4438 MNMGRTLAQYSADAEILAEFEQSNVSGKSFDYSKSVVDPPKSVSEEKMTAYLSRIQRGGLIQPFGCMLAVEEPTFNIIGYSQNSFHLLGVKTQSDTEELMGGLLGVDATTLFTPASGASLAKAVASREISLLNPVWVYARATQKPFYAILHRIDVGVVIDLEPARSSDPALSFAGAVQSQKLAVRAISRLQSLPGGDIGLLCDSVVGEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRLDLESYLGLHYPATDIPQASRFLFRQNRVRMICDCNAKPVKVTQNQELSQPLCLVNSTLRAPHGCHTQYMANMGSIASLVMSIVVNTKDSMKLWGLLVCHHTAPRYVPFPVRYACEFLMQAFGVQLYMEIQLAAQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPNIKDLVKCDGAALYYDGNCWLLGTTPSESQVKDIAEWLLSTHGDSTGLSTDSLADAGYPGAVLLGDAVCGMAMARISSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGRKMNPRSSFKAFLEVVKSKSSPWEASEINAIHSLQLIIRDSFHNSENSGIKAMNYIQRSDASSGGIDELSSVAFEMVRLIETATVPIFGVDTGGLINGWNVKIAELTGLLANEAIGKSLVNEVAHADSRNNLENIQSKALQGLEDKNFELKLKHFGNQQENGVVYLIVNACTSRDYTNAVVGVCFVGQDITCEKVVLDKFVKLEGDYKAIIQSLNPLIPPIFASDESACCSEWNAAMERITGWKRDEVIGKLLPGEIFGSFVRLKGQDTLTNFMILLYRGISGQEFEKFPFGFFDRNGEFIEAYITANKRIDTSGNMIGCFCFLQIVSRDPNQPSDGQNLPQGRKSISESKEFAYILQEMMNPLNGIRFTHKLLEKTAVSESQKQFLDTSAACERQIMAIIEETYIGSINEGSVQLNMEEFLLGSILDAIVSQVMLLVRGKSLQLFHEIPDEMKTLALYGDQIKLQVVLSDILLNVVNYTPSPNGWVEIKISPGLKIIQDGHEFIHLKFRMSHSGQGLPSNTLQDMFEEGTQWTTQEGLGLYMSRKMLSRMNGHVHYAREQNKCYFLIDLELRTRKERQRNLQAETSMLS* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2231 1100 Pfam GAF domain 197 367 IPR003018 GO:0005515
Ahy3g2231 1100 Gene3D - 903 1076 IPR036890 -
Ahy3g2231 1100 Gene3D - 372 545 IPR043150 -
Ahy3g2231 1100 SUPERFAMILY GAF domain-like 177 363 - -
Ahy3g2231 1100 SUPERFAMILY GAF domain-like 375 552 - -
Ahy3g2231 1100 Gene3D PAS domain 588 703 - -
Ahy3g2231 1100 TIGRFAM sensory_box: PAS domain S-box protein 589 704 IPR000014 -
Ahy3g2231 1100 PANTHER TWO-COMPONENT HISTIDINE KINASE 5 1089 - -
Ahy3g2231 1100 SMART HKATPase_4 970 1084 IPR003594 -
Ahy3g2231 1100 CDD PAS 593 700 IPR000014 -
Ahy3g2231 1100 ProSiteProfiles PAS repeat profile. 716 794 IPR000014 -
Ahy3g2231 1100 ProSiteProfiles PAS repeat profile. 582 653 IPR000014 -
Ahy3g2231 1100 ProSiteProfiles Histidine kinase domain profile. 865 1084 IPR005467 -
Ahy3g2231 1100 SUPERFAMILY PYP-like sensor domain (PAS domain) 730 832 IPR035965 -
Ahy3g2231 1100 PIRSF Phytochrome_conventional 1 1091 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Ahy3g2231 1100 Gene3D PAS domain 54 300 - -
Ahy3g2231 1100 PRINTS Phytochrome signature 297 318 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 482 501 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 698 718 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 515 533 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 585 601 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 212 231 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 678 695 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 112 134 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 397 417 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 PRINTS Phytochrome signature 604 619 IPR001294 GO:0006355|GO:0009584
Ahy3g2231 1100 CDD HATPase_Phy-like 969 1082 IPR044767 -
Ahy3g2231 1100 Pfam His Kinase A (phospho-acceptor) domain 860 914 IPR003661 GO:0000155|GO:0007165
Ahy3g2231 1100 Pfam Phytochrome region 380 555 IPR013515 GO:0006355|GO:0009584
Ahy3g2231 1100 Pfam PAS fold 716 835 IPR013767 GO:0006355
Ahy3g2231 1100 Pfam PAS fold 585 700 IPR013767 GO:0006355
Ahy3g2231 1100 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 970 1080 IPR003594 -
Ahy3g2231 1100 ProSitePatterns Phytochrome chromophore attachment site signature. 297 306 IPR013516 -
Ahy3g2231 1100 PANTHER PHYTOCHROME E 5 1089 - -
Ahy3g2231 1100 SMART pas_2 584 651 IPR000014 -
Ahy3g2231 1100 SMART pas_2 715 785 IPR000014 -
Ahy3g2231 1100 Pfam PAS fold 50 164 IPR013654 GO:0006355
Ahy3g2231 1100 SMART HisKA_10 858 922 IPR003661 GO:0000155|GO:0007165
Ahy3g2231 1100 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 923 1082 IPR036890 -
Ahy3g2231 1100 SMART gaf_1 197 377 IPR003018 GO:0005515
Ahy3g2231 1100 SUPERFAMILY PYP-like sensor domain (PAS domain) 55 166 IPR035965 -
Ahy3g2231 1100 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 197 357 IPR016132 -
Ahy3g2231 1100 CDD HisKA 858 913 IPR003661 GO:0000155|GO:0007165
Ahy3g2231 1100 CDD PAS 727 835 IPR000014 -
Ahy3g2231 1100 Gene3D - 178 528 IPR029016 -
Ahy3g2231 1100 Gene3D PAS domain 729 841 - -
Ahy3g2231 1100 SUPERFAMILY PYP-like sensor domain (PAS domain) 588 696 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2231 Ahy-Chr3 74943598 74949319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2231 8 1084 Histidine Kinase Gene Family AT4G18130 63.201 0.0 1446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2231 K12123 - gmx:100808192 1833.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2513 13 70691092 70696981 Ahy3g2231 3 74943598 74949319 hybridization