Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2230 ATGAAGCAGTCTTTTGATCCTTCATGTTTGGGTGTTTCAAAGATTCCATCGATAAATATACCTAGAGGAGTGGGGTGCAGTGCACGAGGGGTTTCATCTGGATCTGATTTATACCATGCGTCATCTGATGCTAGTCTCTTTTCCAGTTCATTACCTGTTCTTCCACACGAAAAGTTGAACATAAATGATACTGAAAATGGTTATCAATCTGTTGATGACATCTCATCTGGCTTTGAAAAGCTTCAAGACAAGGGTTCATTAGAAGGTGTCGGTGCTCATGCAGTGGGAACCACGCTTCCTGATGATGAAGACGAGCTATTGGCTGGCATAATGGATGATTTTGATCTAAGTGGTTTACCTGGTTCTCTTGAGGACTTGGAAGAGTATGATCTTTTTGGAGATATGGATCTAGATCCTGATCAGGATGGTTTCAGTGCGGGCATGTCCAAATTGAACTTCTCCGATAGTGTTGTTAGCAACGGTTTGCCTCATTATTCTTTTCCTAATGGTGTTGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACGCTATTTGTTCGAAATATTAACAGCAACGTGGAGGATTCAGAGCTGAGAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGTTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGGATTACAAAACAAACCTCTGCGGCGCAGGAAACTTGACATACATTTCTCAATACCGAAGGATAACCCATCAGACAAGGATATCAACCAAGGAACCTTGGTGGTTTTCAATTTGGATCCATCTGTTTCAAATGAAGACCTCCGTCAAATATTTGGGGCTTATGGAGAAGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTCATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTAAAATCATTAAATAGAAGTGACATAGCTGGTAAACGGATAAAGCTGGAGCCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTATTGCTCCAACTAAATCAAGAGCTTGATCAAGATGAAGCTCGGAACTTTCGGTATCAAGTGAGTTCACCTGTGGCCAACTCTCCACCAGGTAACTGGATGCAGTTCAATAGTCCTGTCGAGCAGAATTCTATGCAAACGATCAGTCATTCTCCTGGCTCTAGGATCATGAGCCCAACAACTGGTAGCCACTTGCCAGGGCTGGCTTCAATTTTGCAACCTCAGGTATCGAATACTGTGAAGGGTGCAACTATTGACAAGGACTTTGGAAGGAGCAATCATGGAGAGCACATTTTTACCAGTGTGAATTCAACGCAAGGAGCTACTTTTCAGTCACATTCACTTCCAGAGCCCAAATTCAGCCAATATCATGGATCTTTGTCCTTGTTTGGTCCATCAACATCAAAATCAAATGAATCTTCGATGGAAACCTTATCTGGGGCACAATTTTTATGGGGAAGTCCAACCCTTTACTCGGAACGTAATAAGCCTTTAGCTTGGCCAAGACCAGCTGCGGTGCATCCATTTACATCAAATGGCAAGGGGCATGGCTTCCCATACTCAAGTCAAAGTACTTCCTACGTTGGGGCATCCCACCATCATAACAATCATCATGTTGGTTCTGCTCCATCAGGTTTGCCACTAGAGAGGCACTTTGGTTTTCCCGAGTCACCTGAAACTTCGATCATGAATAATGTCGGTTATGGAGGCATGGGTCTGGGGCACACTGATGGAAATTACGTGGTTAAAACAAGTGGGCCTGTAAATGCTGGCATTACTATTCCGAGAAATATTTCTGAGAACGGTTCATCAAACCTTAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTGTTTTTGGGTAGTGGTCCATATGCAGGACTACCACCTACCACCATGGATAGTTTGACCGACCGTTCTCAGAGCAGATGGATTGAGAACAATGGAAGCCAAGTTGATAGCAAGAAGCAATTCCAGCTTGATTTGGATAAGATTAAATGTGGTGAAGATACAAGGACTACATTAATGATAAAGAATATTCCAAATAAGTACACGTCAAAAATGTTATTAGCTGCCATTGATGAAAATCACAAGGGTACATATGATTTTCTCTATCTCCCAATTGACTTTAAGAATAAATGCAATGTGGGATATGCATTTATCAATATGTTGTCACCCTCTCTTATTATTCCATTCTATGAGACATTCAATGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAGGTTGCATCTTTGGCATATGCTCGAATACAAGGGAAGACTGCACTTGTGAGCCATTTCCAAAATTCAAGTTTGATGAACGAAGACAAGCGCTGCCGCCCAATTCTCTTCCATTCAGAGGGTCCTGAAACCAGTGATCAGATCATACAAGAGCATCTTCCCTCCAGCATTTTGAATGTTCAGGCACTTAAGCTGATTGACCCGTCAAGTGATTTTGCTGGAAGTCCAACGAAGGACGGATTTCTCGTGAGCTTTGAGACAAGTTAA 2556 0.4245 MKQSFDPSCLGVSKIPSINIPRGVGCSARGVSSGSDLYHASSDASLFSSSLPVLPHEKLNINDTENGYQSVDDISSGFEKLQDKGSLEGVGAHAVGTTLPDDEDELLAGIMDDFDLSGLPGSLEDLEEYDLFGDMDLDPDQDGFSAGMSKLNFSDSVVSNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRGLQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLLLQLNQELDQDEARNFRYQVSSPVANSPPGNWMQFNSPVEQNSMQTISHSPGSRIMSPTTGSHLPGLASILQPQVSNTVKGATIDKDFGRSNHGEHIFTSVNSTQGATFQSHSLPEPKFSQYHGSLSLFGPSTSKSNESSMETLSGAQFLWGSPTLYSERNKPLAWPRPAAVHPFTSNGKGHGFPYSSQSTSYVGASHHHNNHHVGSAPSGLPLERHFGFPESPETSIMNNVGYGGMGLGHTDGNYVVKTSGPVNAGITIPRNISENGSSNLRMRSSPRLSPVFLGSGPYAGLPPTTMDSLTDRSQSRWIENNGSQVDSKKQFQLDLDKIKCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKTALVSHFQNSSLMNEDKRCRPILFHSEGPETSDQIIQEHLPSSILNVQALKLIDPSSDFAGSPTKDGFLVSFETS* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2230 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Ahy3g2230 851 PANTHER RNA RECOGNITION MOTIF-CONTAINING 3 842 - -
Ahy3g2230 851 Pfam RNA recognition motif 2 688 784 IPR007201 -
Ahy3g2230 851 PANTHER PROTEIN MEI2-LIKE 2 3 842 - -
Ahy3g2230 851 Gene3D - 270 362 IPR012677 -
Ahy3g2230 851 CDD RRM2_MEI2_like 270 340 - -
Ahy3g2230 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 252 IPR000504 GO:0003723
Ahy3g2230 851 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 338 IPR000504 GO:0003723
Ahy3g2230 851 SMART rrm1_1 187 255 IPR000504 GO:0003723
Ahy3g2230 851 SMART rrm1_1 690 766 IPR000504 GO:0003723
Ahy3g2230 851 SMART rrm1_1 272 340 IPR000504 GO:0003723
Ahy3g2230 851 Gene3D - 175 269 IPR012677 -
Ahy3g2230 851 SUPERFAMILY RNA-binding domain, RBD 183 346 IPR035979 GO:0003676
Ahy3g2230 851 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 259 IPR000504 GO:0003723
Ahy3g2230 851 SUPERFAMILY RNA-binding domain, RBD 690 774 IPR035979 GO:0003676
Ahy3g2230 851 CDD RRM3_MEI2_like 691 776 IPR034454 -
Ahy3g2230 851 CDD RRM1_MEI2_like 185 261 IPR034453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2230 Ahy-Chr3 74893582 74901420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2230 181 379 Eukaryotic Initiation Factors Gene Family AT1G71770 26.222 5.38e-07 51.6