Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2180 ATGACGAGAACACAAGAATTAGTGATGATGATAACCTTTTTAGTGTTGGGATGTGCACTAACCATGGCAGAAACAGCAGCTCTAGAGCATGCTCATCACTATGAATGCACTCATACCAGATACCCTAGTCTATGTGATGAAACCTTGAAGGAGTTGATGAGTTCAGGGAATGATAAAAATGTTGATATCATTCTGGCTCTTGTAAACAAAACCATATCTGAAACCAACTTGCCAAGATCATATTTTGCTTCATTTGAGACTCAGGATAATGCTCAACAAGACAAATCATCTTCATCAGTCGGAGGTTATTGTCAAGAGCTAATGGACATGTCAATGAAGAGGTTGGACCAATCCATGGAAGCACTGAGCAAGCCAACAAGAAACAAGGAGGACATCCAAACGTGGCTAAGCGCTTCCCTAACTTTCCAACAAACTTGCAACGACTTCGCACGATCACAAACCTCCACCGGCGTCGCCACTGCCGTGGTAGACACCATTTCCAAGAAGATGGACTATCTTTCCGCATTAGCCAGTAACTCACTTGCCCTGGTTAACCAAATCACCGCCACCACAACCACAACCACTACCACGAAGCGAAAAGAAAAGGAAAGCAAAGAGGAATTTCCCGAATGGATTTCTTCGAAAGCAAGAAAACTCCTTCAGGGAGCAGCGCCCATAGAAGCGAACGCGGTGGTTGCGCAAGACGGTTCAGGGAACTACAAGACGATTTCTGAGGCCATTGCAGCGGCCACAGGTGGAAGATTTGTGATTTACGTGAAAGCAGGGACTTACAAGGAGAAGATTCGGACAAGTAAGAATGGCATAACGTTGATTGGAGCGGGTAAATATTCGACCGTTATTGTTGGAAGTGAGAGCGTTAAGGGTGGAGCTTCCTTGCCTGACACCGCCACATTCACAATCATGGGGGATGGATTCATAGCAAAAGACATAGGTTTCCACAACAACGCAGGCCCACAAGGCGAACAAGCCGTGGCTCTCTACATAGCTTCAGATCGCTCCGTTCTCTTCCGATGCAGCATTGCAGGCTACCAAGACACCATCTACGCCCACTCCCTCCGACAATTCTACAGAGAATGCGACATCTACGGCACCATCGACTTCATCTTCGGAAACGCCGCTGCCGTCTTCCAAACCTGCAACATCATGCTCCGCCGCCCTCTCCACGGCGGCTCCAACGCCGTTCTCGCCAACGGAAGAACTGATCCTGGACAGAACACAGGCTTCTCGCTTCACAAGTGTGCCATAACACCAAGCTCGGATTTGTCTCCTGTGAAGCACTCTGTTAAGTCTTATCTTGGGAGGCCCTGGAAGGAGTATTCTAGGGCCGTCGTGATAGGATGTACCATAGACGACGCCATTGCGCAGCAGGGTTGGGTTGAGTGGCCTGGTTATGGAAGCTCGGTCTTGAGGACACTGTATTTTGGTGAGTATGGTAATTCAGGACCTGGTGCTGGAACTGCAAGAAGGGTTCAGTGGCCTGGTTTTCATGTCATGGGTAATGTTGAGGCTTCTAAGTTCACTGTTGGTAACTTTATTGCTGGAAGTTCATGGATTCCTTCCTCCGTCGGTTTCATCTCGGGTCTCTAA 1608 0.482 MTRTQELVMMITFLVLGCALTMAETAALEHAHHYECTHTRYPSLCDETLKELMSSGNDKNVDIILALVNKTISETNLPRSYFASFETQDNAQQDKSSSSVGGYCQELMDMSMKRLDQSMEALSKPTRNKEDIQTWLSASLTFQQTCNDFARSQTSTGVATAVVDTISKKMDYLSALASNSLALVNQITATTTTTTTTKRKEKESKEEFPEWISSKARKLLQGAAPIEANAVVAQDGSGNYKTISEAIAAATGGRFVIYVKAGTYKEKIRTSKNGITLIGAGKYSTVIVGSESVKGGASLPDTATFTIMGDGFIAKDIGFHNNAGPQGEQAVALYIASDRSVLFRCSIAGYQDTIYAHSLRQFYRECDIYGTIDFIFGNAAAVFQTCNIMLRRPLHGGSNAVLANGRTDPGQNTGFSLHKCAITPSSDLSPVKHSVKSYLGRPWKEYSRAVVIGCTIDDAIAQQGWVEWPGYGSSVLRTLYFGEYGNSGPGAGTARRVQWPGFHVMGNVEASKFTVGNFIAGSSWIPSSVGFISGL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2180 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 187 IPR035513 -
Ahy3g2180 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 189 IPR035513 -
Ahy3g2180 535 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 187 IPR006501 GO:0004857
Ahy3g2180 535 Gene3D - 223 535 IPR012334 -
Ahy3g2180 535 SMART PMEI_2 27 183 IPR006501 GO:0004857
Ahy3g2180 535 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Ahy3g2180 535 PANTHER PECTINESTERASE 9 534 - -
Ahy3g2180 535 CDD PMEI-like_3 36 187 - -
Ahy3g2180 535 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 9 534 - -
Ahy3g2180 535 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Ahy3g2180 535 Pfam Pectinesterase 229 521 IPR000070 GO:0030599|GO:0042545
Ahy3g2180 535 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Ahy3g2180 535 SUPERFAMILY Pectin lyase-like 226 527 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2180 Ahy-Chr3 68250077 68254919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2180 10 535 Carbohydrate Esterase AT2G45220 43.691 7.69e-136 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2180 K01051 - gmx:100795439 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2428 13 56030966 56036178 Ahy3g2180 3 68250077 68254919 hybridization