Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2172 ATGATGTTCCATTCTCAGGGTTCTTCAAGGCCTTCTAGTCTTCTTGCTGTCCTGAATGGTGGTAAATCATGTGAGGATAAGCAAAAAGAGAAGCAAGAGGAAGCTTCTGCTTCGGAGAATCAATCACAATACCCCTTTCCGGAGCTTTCTTCCTCTGGTCGTCTTGAGGTGACGGTATTAACTAAACCTACTGTGGATGAACTCGGTCGAGTAATTGAGCAACTGCAGCCAGATTTTGTTTACCTACAAGGTAGACAGCTAGAAGAAAGTGGAGAAATTGGATCTCTTATATGGGAAGATTTTGACCTGTCTAGTCCAGAAGCATTATGTGCATTGTTTTGTTCAAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAACTTGGCAGAGGCACTCCACTCTAAGGGAATTCCTTACACCATATATTGGGAAAATGACTTTTTAAAGTATGCAGCTTCTCATTTTCATCAAGCTTTGTTCTCAGTGGCACAGAGTACATCGAGTCACACATGGGATGCTTTCCAGCTTGCTCTTGCAACTTTCAGACTATACTGTGTACGAAACAATGTCTTTCCTCCTAACAATAATAAAGGTGGTGGCAAGCTTGGGCCACAAATTCTTGGTGACCCTCCCAATATTGATGTTGGTACAAGTGAACATGACATAGAACAGGAGGAGACTGAACCTGAGAGCATTTCTGCTATAACAATATATGATACTGATGTGAACATGAGATTTCTTGTTTGTGGAGTTAATTGCACTTTGGATGCTTTTTTATTGGGGTCATTAGAGGATGGACTTAATGCTCTCCTATGCACAGAAATACGTGGATGTAAACTTTACAACCGAACAAGTGCTCCACTACCACCTCTCCAAGCAGCAACATTCTCACGTGGTTTGGTGACCATGCGTTGTGATATATCCACTTGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAACTTGTTCAAGCAGTTCCTAATCACGTACGAAGCAAATTGTCTTACTCTGAGCCTCGAAGATCATCCTCAGTAGCCTGTGGATCAAGCGTCTTTGAAGTTTGCATGCGTGTTCCTGCATGGGCTTCACAGATTCTGAGACAGCTGGCTCCTAATGTATCATACCGTAGCCTAGTGATTTTGGGAGTTGCTAGTATTCAAGGATTGCCAGTTGCATCATTTCATAAAGATGATGCTGAACGTCTCCTTTTCTTTTGTACTAGGAAGGGGAAAGAAAACTCTAGTAATGATCCTGTTTTCTCTGGGTATCCTACATGGCTGATGCCTCCAGCACCTAGTCGAAAAAGATTTGAACCATGCTCTAGGAAAAAGTCAGAGGATTTTCGTAGTGATAGACATAAATTAGATTTTGCTGCAATGAGACCAATTCCTCATTCTAATTATCATAAGATTCTTCCCTTTTCGGGATTATCTGAGGGTGAAAGGCATGGGGAACATGGAAAGTCAAATCAGTTACTTGCTCCTATTAGGCATAATGTTGTAGGCATAAATTCTGTACCAAAGAGGAAATCTGCATCAAACACATTTCAAGCTCTTCAGGTTATTTCTTTAAATCCGCTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCGATACGAGTTTGCTCAGAGGAGGAATTCTTGAGGGATGTGATGCAGTTTCTAATCCATCGAGGGCATAATCGCCTAGTCCCACCGGGTGGGATAGCGGAGTTTCCTGATGCCATTCTCAATGCAAAACGCCTTGATCTTTTCAACCTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAACTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCACACTCTGACAAATAGAATGACGGGTGTTGGCAATACATTGAAGAGACATTATGAGACTTATCTTTTAGAATATGAATTAGCTCACGATGACGTAGATGGGGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGTATATGTGGTGAGTGGGCTCACTTTGGATGTGATAGGCGGCAGGGACTTGGGGCATTTAAGGACTATGCTAAAACTGATGGGCTGGAATACGTTTGTCCTCACTGCAGCATTTCAACTTATAGAAAAAAATCTCAAAAAACTCTCTCATTTGACTAG 2238 0.4182 MMFHSQGSSRPSSLLAVLNGGKSCEDKQKEKQEEASASENQSQYPFPELSSSGRLEVTVLTKPTVDELGRVIEQLQPDFVYLQGRQLEESGEIGSLIWEDFDLSSPEALCALFCSKLPNTVYLETPKGENLAEALHSKGIPYTIYWENDFLKYAASHFHQALFSVAQSTSSHTWDAFQLALATFRLYCVRNNVFPPNNNKGGGKLGPQILGDPPNIDVGTSEHDIEQEETEPESISAITIYDTDVNMRFLVCGVNCTLDAFLLGSLEDGLNALLCTEIRGCKLYNRTSAPLPPLQAATFSRGLVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAVPNHVRSKLSYSEPRRSSSVACGSSVFEVCMRVPAWASQILRQLAPNVSYRSLVILGVASIQGLPVASFHKDDAERLLFFCTRKGKENSSNDPVFSGYPTWLMPPAPSRKRFEPCSRKKSEDFRSDRHKLDFAAMRPIPHSNYHKILPFSGLSEGERHGEHGKSNQLLAPIRHNVVGINSVPKRKSASNTFQALQVISLNPLPMKKHGCDRAPIRVCSEEEFLRDVMQFLIHRGHNRLVPPGGIAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISTYRKKSQKTLSFD* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2172 745 CDD PHD_ARID4_like 678 729 - -
Ahy3g2172 745 CDD ARID 570 668 - -
Ahy3g2172 745 Gene3D - 566 668 IPR036431 GO:0003677
Ahy3g2172 745 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 741 IPR042293 -
Ahy3g2172 745 MobiDBLite consensus disorder prediction 22 49 - -
Ahy3g2172 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 739 IPR013083 -
Ahy3g2172 745 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 741 - -
Ahy3g2172 745 ProSiteProfiles ARID domain profile. 568 672 IPR001606 GO:0003677
Ahy3g2172 745 Pfam ARID/BRIGHT DNA binding domain 571 668 IPR001606 GO:0003677
Ahy3g2172 745 SUPERFAMILY ARID-like 569 683 IPR036431 GO:0003677
Ahy3g2172 745 SUPERFAMILY FYVE/PHD zinc finger 664 732 IPR011011 -
Ahy3g2172 745 SMART ARID_2 565 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2172 Ahy-Chr3 67594050 67604061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2172 2 741 ARID Transcription Factor Family AT3G43240 64.295 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ahy3g2172 ARID 6.90E-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2172 - - gmx:100808357 1199.5