Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2171 ATGGCACCAACATTATTTCCCTTTATCACTCTTTTTCCTGGGAGAAGAGAAAAACTCACATTCGTAGTCCGTAGCAACCAAATAAGAGCAACTATGGCTTCTGACACTGTTCTTCCTTCCATGCCTCTAACCGTTGTTGGATACGTCACTAGTGCCACTCCAACTAAACACACTCACTCGCAGCATCACAGCCGTGCCTTTCTCATAACGGTAACGGTCATCGCCATTGCGGTTACCGTCTTCTTCGCTCTCTACTTCCTCCTCCGTGACCTCAGCCGTTACTTCCGCCGTCAAGCTCATCAAATTAGCGTACGCACATCATCTGCGGTCTTCCCCTCCGGTGCTCGCAGCCGAGTATCACCAGAGATCGCTGCGCCTTCCACTGTTGACTCCCTCCCGCTGTTTACGTTCTCTTCTGTTACACGCCGCTCTTCCTCCGTCGTAGATGGTGGTGGAGGAGACTGCGCCGTTTGCCTCTCCAGATTCGAGCAACGCGACCTTCTTCGTCTCCTTCCTCTCTGCTGCCACGCGTTCCATGCTGAATGCATTGACGTCTGGCTCCGAACGAATCTCACCTGTCCGCTCTGCCGATCCGCAGTGTTTTCTTCGGAATCCGACGTCGGGAAGATTCTCCGGTCATCGTCATCTGCCGTCGGCGAAAGCTTCCGCCTCGAGATAGGTAGCATCAGTCTCCGTGGAACCACGTCATCCGCCGCCGAAGAATCGCGCATGAGAACATATTCGGTTGGCGAGTTCGATTACCTCGTTGACGAGGACGCTGAGATTTCTTACAGCCAGGCTCGCCGGAGAACCGATTCCGGCGAGAAAGATGATGCTGAGCCGGTGGAATCATCGGCACCGAGCTTGGCTAGCGAGGTAGGCAGCAGATGGAGCTGGAAGGATTATTATGATTTGGTTTCAGCTTCGTTAACGCCAACGGCGTCTTTTCGAAGCTCCGGAAGGTTCTTCACTGGGAGTAGCAGGCGAAACGACGTCGTTGCAATTGGTGATGATGAAAGGGAAGCCAACCGTTTTGGGGAAGAAATCAGCGAAGTCTTTCGATGGCTTTCAATGGCATAA 1080 0.5306 MAPTLFPFITLFPGRREKLTFVVRSNQIRATMASDTVLPSMPLTVVGYVTSATPTKHTHSQHHSRAFLITVTVIAIAVTVFFALYFLLRDLSRYFRRQAHQISVRTSSAVFPSGARSRVSPEIAAPSTVDSLPLFTFSSVTRRSSSVVDGGGGDCAVCLSRFEQRDLLRLLPLCCHAFHAECIDVWLRTNLTCPLCRSAVFSSESDVGKILRSSSSAVGESFRLEIGSISLRGTTSSAAEESRMRTYSVGEFDYLVDEDAEISYSQARRRTDSGEKDDAEPVESSAPSLASEVGSRWSWKDYYDLVSASLTPTASFRSSGRFFTGSSRRNDVVAIGDDEREANRFGEEISEVFRWLSMA* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2171 359 Pfam Ring finger domain 154 197 IPR001841 -
Ahy3g2171 359 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 34 347 - -
Ahy3g2171 359 CDD RING-H2_PA-TM-RING 154 197 - -
Ahy3g2171 359 MobiDBLite consensus disorder prediction 266 282 - -
Ahy3g2171 359 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Ahy3g2171 359 SUPERFAMILY RING/U-box 137 203 - -
Ahy3g2171 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 34 347 - -
Ahy3g2171 359 SMART ring_2 155 196 IPR001841 -
Ahy3g2171 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 206 IPR013083 -
Ahy3g2171 359 MobiDBLite consensus disorder prediction 266 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2171 Ahy-Chr3 67374134 67375785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2171 32 198 Rapid Response to Elicitors AT3G05200 32.749 3.94e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2171 K10663 - gmx:100804962 277.33