Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2170 ATGGGCAACAAGGTTGGAACGCCATGCGTGTGCATTCCCATAAAAAGAATGAAAAGAAAGGAAACAAGAGTTGCTGCTAATTTTCCTTCCATCAGTGATTTGAGCCTTGAAAATTTTCTGGACGCCATTGAAGAACAAACTCCTATTCATCTTGACGTCCCATCTTTTCTTTGCCAAATCTGCTTTGAATCGAAGCCTCTAAACCAGTCCTTCGACTTGGAGGGTTGCACGCACTTCTACTGCACAAGATGCGTAGCCCAATACATCGTGGCGAAGCTCAAAGACAATGTGTTCAATGTCGTGTGCCCTGAGCCAACATGCTCTGGAATCTTGAACCCTAACCACTGCAAATCAATTCTACCGAGCAATGTTTTCGAATGGTGGGAGCGCGTTCTAAGCGAATCGGCGATCCCTGAAAATGTCAAATTCTATTGTCCTTTCAGTGATTGCTCTGCCTTGTTAATCAACAACAATGATGATGGAAAAAGTAGGATGCTGGGATCGGATTGTCCTCATTGCAAGAGAAGCATTTGTGTCAAGTGTCAGGCACCTTGGCATACAGAATTGAGCTGTGAGAAATTTCAGAAAAAGAATAACAAAAGCAATGATCTGATGCTGGATTTAGCCAAGAGAAGGAAGTGGAAACAGTGCCCTAATTGCAAGCGCTACGTTGAGAAGACAGATGGCTGCAATGATATAACATGCAGGTCCGTTTCCTTTTTTTTCGTCCCTTCTTATATATAA 744 0.4301 MGNKVGTPCVCIPIKRMKRKETRVAANFPSISDLSLENFLDAIEEQTPIHLDVPSFLCQICFESKPLNQSFDLEGCTHFYCTRCVAQYIVAKLKDNVFNVVCPEPTCSGILNPNHCKSILPSNVFEWWERVLSESAIPENVKFYCPFSDCSALLINNNDDGKSRMLGSDCPHCKRSICVKCQAPWHTELSCEKFQKKNNKSNDLMLDLAKRRKWKQCPNCKRYVEKTDGCNDITCRSVSFFFVPSYI* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2170 247 SUPERFAMILY RING/U-box 141 197 - -
Ahy3g2170 247 Pfam IBR domain, a half RING-finger domain 141 191 IPR002867 -
Ahy3g2170 247 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Ahy3g2170 247 Gene3D - 189 242 - -
Ahy3g2170 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 139 IPR013083 -
Ahy3g2170 247 ProSiteProfiles TRIAD supradomain profile. 54 247 IPR044066 -
Ahy3g2170 247 SUPERFAMILY RING/U-box 55 138 - -
Ahy3g2170 247 ProSiteProfiles Zinc finger RING-type profile. 58 103 IPR001841 -
Ahy3g2170 247 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 241 IPR031127 GO:0004842|GO:0016567
Ahy3g2170 247 SUPERFAMILY RING/U-box 204 236 - -
Ahy3g2170 247 SMART ibrneu5 126 191 IPR002867 -
Ahy3g2170 247 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 49 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2170 Ahy-Chr3 67262590 67263333 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2170 41 242 C3H Transcription Factor Family AT2G19610 27.830 5.53e-22 92.0