Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2161 ATGGCCAAAGGTGGAGGAAAACTAATGAAGCTCAAGTCAGTGCTCAAGAAATGGAACTCATTCGGCAACATCACCACCACCACCACCACCAATAAGCAGAGCCGTTGCGGCGCCACCGTGAGCGCCGTAGCTAACAACGAACAATCCTCCGTGTCGGAAGCCGATTTCCAGCCAGTGTATGTGGGGAAGACGTTGCGGAGATACTTGGTGAGGCCGGACGTGGTGGAGCATCCACTTTTCCGAGAGCTCGTGGATAGATCACGTGAGTCCTACGACGACAACAACTTCGTCGTCGTGGAGGAGGACACTGTCCACGTGGCATGCGAGGTCGTGCTGTTCGAGCACCTGCTTTGGATGCTAGAAAACGCTGATCCTCAACCTGAGTCACTCGACGAGCTCGTCGAATTCTATACTTGCTAG 420 0.5405 MAKGGGKLMKLKSVLKKWNSFGNITTTTTTNKQSRCGATVSAVANNEQSSVSEADFQPVYVGKTLRRYLVRPDVVEHPLFRELVDRSRESYDDNNFVVVEEDTVHVACEVVLFEHLLWMLENADPQPESLDELVEFYTC* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2161 139 Pfam Auxin responsive protein 15 120 IPR003676 GO:0009733
Ahy3g2161 139 PANTHER SMALL AUXIN-UP RNA-RELATED 5 139 - -
Ahy3g2161 139 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 5 139 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2161 Ahy-Chr3 66661864 66662860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2161 4 135 Calmodulin-binding Proteins AT3G43120 25.157 4.72e-08 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2409 13 55212467 55213515 Ahy3g2161 3 66661864 66662860 hybridization