Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2158 ATGTCTGGTGAAGAAAGTCCTGTTGTGGCAACTGAGCCAGCAGCTCCTGCCATTGGCGAGCAAATGGATATCATGAATGCCTTACAGCTAACACTTAGGAAGTCACTTGCTTATGGTGGTCTTGCACGAGGCCTTTATGAGGGTGCCAAGGTGATCGAGAAGCGCACTGCTCAGCTCGTTGTTCTTGCCGAGGATTGTGACCAACCTGACTATGTTAAACTCGTCAAGGCCCTTTGTGCTGAGCATTTGTGA 252 0.496 MSGEESPVVATEPAAPAIGEQMDIMNALQLTLRKSLAYGGLARGLYEGAKVIEKRTAQLVVLAEDCDQPDYVKLVKALCAEHL* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2158 83 ProSitePatterns Ribosomal protein S12e signature. 27 45 IPR000530 GO:0003735|GO:0005840|GO:0006412
Ahy3g2158 83 PANTHER 40S RIBOSOMAL PROTEIN S12 1 82 - -
Ahy3g2158 83 PANTHER 40S RIBOSOMAL PROTEIN S12 1 82 IPR000530 GO:0003735|GO:0005840|GO:0006412
Ahy3g2158 83 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 27 82 IPR004038 -
Ahy3g2158 83 SUPERFAMILY L30e-like 18 82 IPR029064 -
Ahy3g2158 83 Gene3D - 8 83 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2158 Ahy-Chr3 65915231 65918468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2158 18 82 Cytoplasmic Ribosomal Protein Gene Family AT1G15930 76.923 1.65e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2158 K02951 - gmx:100500093 129.413