Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2102 ATGGCTTTTCGCGACCACCAACCACACGAAATTACTTTTCAGTCCTTCACGGACGAGCAACATTTAAATCACAACAGAGACATGCAGAGGATGCTAACTCTCTCCGGCGCCGGCGATGGAGGACCGGCTCCGACGTGGCTGAACAACGTCCGGCAGCAGAATTTCCTGCACCTTCAGCCGAACGCGTCGTCGGCACGAAACGACGACGTTCGAGACATGATGGCGGCGGAAGCTACGTCAGCGGAGAAGAGCATGGATCATCGGAAGAACTACCTCCAGCAGCAGCGGACGATGACGGAAAGTAACAACTGCGACTCAGAGGATGCGGCGGAGTACAAGGCGGACATCCTAGGACACCCGCTATACGAGCAGCTGCTGTCGGCGCACGTGTCGTGTCTGAGGATCGCGACGCCCGTTGACCAGCTACCGAGAATCGACGCTCAGTTGCAGCAGTCGCAGCGCGTGGTGGAGAAGTACTCTGCGCATGGGAATAATGGTGCTCTCGATGAGAAGGAGCTTGATAACTTCATGACACATTACGTTCTATTGCTTTGCGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTCCATGCCATGGAAGCAGTGATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACGGGTGTATCTCCCGGAGAAGGGACAGGTACGACGATGTCGGACGACGAAGACGATCAGGCGGCAGAGAGCAATGGCAACTTGTACGAAGGATGTTTAGATGGCGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCAACTGAAACTGAAAGATCTCTAATGGAGCGTGTTCGCCAGGAGCTAAAGCACGAGCTAAAACAGGGTTACAAGGATAAAATTGTTGACATAAGAGAAGAAATTCTGCGAAAGAGAAGAGCCGGGAAGCTTCCTGGGGATACCACCTCTCTCTTAAAAGCTTGGTGGCAATCTCATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCGAGGCTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAAAGGAATTGGCATACTAATCCTTCGTCGTCTACTGGCGCCAAAAGCAAGCGCAAGAATACTAATAATAATAGCGGTGGTGCAGGTGAAACAAATAACCAGAGCTTCATGTGA 1173 0.509 MAFRDHQPHEITFQSFTDEQHLNHNRDMQRMLTLSGAGDGGPAPTWLNNVRQQNFLHLQPNASSARNDDVRDMMAAEATSAEKSMDHRKNYLQQQRTMTESNNCDSEDAAEYKADILGHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSAHGNNGALDEKELDNFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGTTMSDDEDDQAAESNGNLYEGCLDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGAKSKRKNTNNNSGGAGETNNQSFM* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2102 390 SMART ELK_2 276 297 IPR005539 GO:0003677
Ahy3g2102 390 Gene3D - 295 372 - -
Ahy3g2102 390 SMART HOX_1 298 363 IPR001356 GO:0003677
Ahy3g2102 390 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 34 378 - -
Ahy3g2102 390 ProSiteProfiles ELK domain profile. 276 296 IPR005539 GO:0003677
Ahy3g2102 390 Pfam KNOX1 domain 112 153 IPR005540 GO:0003677|GO:0005634
Ahy3g2102 390 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Ahy3g2102 390 MobiDBLite consensus disorder prediction 217 242 - -
Ahy3g2102 390 Pfam Homeobox KN domain 316 355 IPR008422 GO:0003677|GO:0006355
Ahy3g2102 390 Pfam KNOX2 domain 169 217 IPR005541 GO:0003677|GO:0005634
Ahy3g2102 390 SMART KNOX2_2 162 218 IPR005541 GO:0003677|GO:0005634
Ahy3g2102 390 CDD homeodomain 299 360 IPR001356 GO:0003677
Ahy3g2102 390 MobiDBLite consensus disorder prediction 353 390 - -
Ahy3g2102 390 ProSiteProfiles 'Homeobox' domain profile. 296 359 IPR001356 GO:0003677
Ahy3g2102 390 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 34 378 - -
Ahy3g2102 390 SUPERFAMILY Homeodomain-like 298 362 IPR009057 -
Ahy3g2102 390 Pfam ELK domain 276 297 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2102 Ahy-Chr3 52336259 52347775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2102 110 379 Homeobox Transcription Factor Family AT5G11060 81.752 2.51e-161 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ahy3g2102 KNOX2 3.70E-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2102 - - gmx:100816347 597.045