Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2088 ATGGTGAAGCAGAACAATAACGTGGAGAAGCTTGCGTCAATGGAGCGGAGTGATCTGAAGTATAAAGTTGTAAGGAAGCGAAAGTGGGGGAAGTATGTTTCAGAAATAAGGCTACCAAATAGCCGCCAGAGGATTTGGTTGGGATCCTACGATACCGCCGAGAAGGCGGCGCGTGCATTTGACGCGGCCATGTTTTGCTTACGTGGCGCCGCCGCCAAGTTCAATTTCCCCGGTGCTCCGCCGGAGATCGCCGGCGGAAGGTACATGACCCCTCCCCAAATTCAGGCCGCTGCCGCCCGGTATGCCAATTCGGACCCGGTTCGACCCTGTTCCACCTCGACTGAAACTTCCACGATGTTGTCGGAGGAGACTAAAACGGTGATGCCGACATCGGCATCACCATCACCGTCACCGTCCGATGTGACTCTTCAAACGGAATGTGACGTCACAGCCATGAACGGGTCGGGCTCGGATCTTTTTACAACAATAGGGTCGGTTAACCACGATTCTATATTTACGGGTTTTGATGATTTTGGTGGGGATTTCTACCTGCCAGAGATGCCGAGTTACGATTATGAAGAGGAGAATTTGGATGGTTTGATAATTGACGACACTTTCTTGTGGAGTTTCTGA 633 0.515 MVKQNNNVEKLASMERSDLKYKVVRKRKWGKYVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGAAAKFNFPGAPPEIAGGRYMTPPQIQAAAARYANSDPVRPCSTSTETSTMLSEETKTVMPTSASPSPSPSDVTLQTECDVTAMNGSGSDLFTTIGSVNHDSIFTGFDDFGGDFYLPEMPSYDYEEENLDGLIIDDTFLWSF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2088 210 MobiDBLite consensus disorder prediction 105 140 - -
Ahy3g2088 210 SUPERFAMILY DNA-binding domain 21 77 IPR016177 GO:0003677
Ahy3g2088 210 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Ahy3g2088 210 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Ahy3g2088 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 210 - -
Ahy3g2088 210 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Ahy3g2088 210 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 210 - -
Ahy3g2088 210 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Ahy3g2088 210 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Ahy3g2088 210 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Ahy3g2088 210 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Ahy3g2088 210 MobiDBLite consensus disorder prediction 106 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2088 Ahy-Chr3 51005078 51006057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2088 1 210 AP2-EREBP Transcription Factor Family AT1G74930 45.116 1.26e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy3g2088 AP2 2.20E-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2088 - - gmx:732656 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2379 13 52671704 52672715 Ahy3g2088 3 51005078 51006057 hybridization