Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2084 ATGTCTAGTTCGTCGGAATACTCGGAATTTTCCGGCCAGAAGCCGGCGAGGTCACCGGAAAAATCGAGCTTCTCTCAGACTTGCAGTTTGTTGAGTCAATACATCAAAGAAAAGGGCAACTTTGGAGATCTTACCCTCGGTATCACATGCAACACCGAACCAAGTGGGTCACCTGAAACATCGTGTCAGTCTGCAACAACTATGAACCTATTTCCTACCAAAGAAAACAACGTTGCACCAAAAAGCCTCACACTCACTGGCACAGCCATGGGTTTGCTCTCTCCACAAGGTGCTTATCGTGCCAATCTTCCCTCTGAAGAAATTCCAAACTTGATCAATTCCAGTGCAGTTAAGTCTGTGAGCAAGGGCCTGAAAACTGCACAATTGACAATCTTCTATAATGGTCAAGTTGTTGTGCTCGATGATTGTCCTGCTGAGAAGGCGAACGAGCTCATGGCTTTTGCCAAGAAAGGAGTCTCTCAAACCCAGAACAACTCTGTCTACACCTACACTCAGAGCCAGCCTTCATTTCCTCCTAATTTGGCCAGAACATCTGCTGCTGATTCGAGTGCTCAAGCCTTTCCTAACGTGAATATTGTTGCAAGTTCCGGTAGCAGTTCGATCCACGAGCACTCAAAACCTCAGTCCAGACCTGTTGTTTGTGATCTACCAATTGCAAGAAAAGCTTCGCTTCATCGGTTCCTGGAGAAGAGAAAGGATAGAATTGCATCAAAGGGTCCATATCAAGCAGCAAATCCCATTGGGAGCGCTAACAAGCCAGCTGAATCCATGTCATGGCTTGAGTTGGGTGCTAAATCTCAAGAATGA 828 0.4626 MSSSSEYSEFSGQKPARSPEKSSFSQTCSLLSQYIKEKGNFGDLTLGITCNTEPSGSPETSCQSATTMNLFPTKENNVAPKSLTLTGTAMGLLSPQGAYRANLPSEEIPNLINSSAVKSVSKGLKTAQLTIFYNGQVVVLDDCPAEKANELMAFAKKGVSQTQNNSVYTYTQSQPSFPPNLARTSAADSSAQAFPNVNIVASSGSSSIHEHSKPQSRPVVCDLPIARKASLHRFLEKRKDRIASKGPYQAANPIGSANKPAESMSWLELGAKSQE* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2084 275 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 261 IPR040390 -
Ahy3g2084 275 Pfam Jas motif 224 249 IPR018467 -
Ahy3g2084 275 Pfam tify domain 126 155 IPR010399 -
Ahy3g2084 275 PANTHER PROTEIN TIFY 10A-LIKE 16 261 - -
Ahy3g2084 275 MobiDBLite consensus disorder prediction 241 275 - -
Ahy3g2084 275 MobiDBLite consensus disorder prediction 1 23 - -
Ahy3g2084 275 SMART tify_2 122 157 IPR010399 -
Ahy3g2084 275 ProSiteProfiles Tify domain profile. 122 157 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2084 Ahy-Chr3 50885739 50888607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2084 1 272 Tify Gene Family AT1G19180 39.636 7.14e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ahy3g2084 tify 2.20E-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2084 K13464 - gmx:100801449 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2373 13 52398332 52401216 Ahy3g2084 3 50885739 50888607 hybridization
Ahy1g1760 1 93869396 93870991 Ahy3g2084 3 50885739 50888607 PCT
Ahy3g2084 3 50885739 50888607 Ahy1g1760 1 93869396 93870991 PCT