Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2033 ATGGGAAGAAGCCCTTGTTGCTCAAAGGAGGGTTTGAACCGCGGTGCCTGGACAGCTCAAGAAGACAAAATCCTCAGAGATTATATCAGTCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGAGCAGGGTTGAAACGTTGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGGCCAGATATTAAAAGAGGAAACATATCAGAAGATGAAGAAGAACTTATCATAAGACTTCACAAGCTACTTGGAAACAGATGGTCACTTATAGCCGGGAGGCTTCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACAAATTTAGGCAAAAGAGTTAGAGATCTTCAAACAATAAGCAGTGCATCTTCTCAGCAACCCAATGAAACAAATAACAACATTCAGAAACCAACAACAATGCCTCCTACAACCAATAAAGTGGTCTCCACAACCACTCCCTCTCTGTCACCGTTAAACGATTCACATTCTCTTCTCGTCCGTACAAAAGCTTCTAAGTGCTCTAAGTCATTATTCTTGGATCATTCATCAACAACAACAACTTCACTGCAGCAGAACAAGACTTCTAGTAATAATAATAATAATAATGACAATAGCCACGAACTCGATGAAACCGCCGCCGATCATGTTTTGCTGCCACCGCCGGGGTTGTTGCTTCCGAGCAACGGTGACAACAACAACACCATGGTGATGATGATGATGGAGATGGGTACCAATTCAGAAGAATACAAAGAGATCTCGACAACAGAATTGCTCTTGGATTTTGACGTTGGCGATATTTGCTTGCATTCTCTTCTGAACTCGGATTTCGAGGATATATGCGATTTCGGTTACAACAACAGTAACAGTAACTGCGAGGATCTGTTTGGATTCTCACCGCCGGAGCAGATGCAGCTGGATTCTTCTGATGAAGTTCTAAAGGAAGCCACCGTACCAAGCAACTTCCCTGACGAAACAAATAATATTGTACAAAACATACAGTTTCTGTGA 1017 0.4228 MGRSPCCSKEGLNRGAWTAQEDKILRDYISLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISEDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKRVRDLQTISSASSQQPNETNNNIQKPTTMPPTTNKVVSTTTPSLSPLNDSHSLLVRTKASKCSKSLFLDHSSTTTTSLQQNKTSSNNNNNNDNSHELDETAADHVLLPPPGLLLPSNGDNNNTMVMMMMEMGTNSEEYKEISTTELLLDFDVGDICLHSLLNSDFEDICDFGYNNSNSNCEDLFGFSPPEQMQLDSSDEVLKEATVPSNFPDETNNIVQNIQFL* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2033 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy3g2033 338 MobiDBLite consensus disorder prediction 186 210 - -
Ahy3g2033 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy3g2033 338 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 246 - -
Ahy3g2033 338 MobiDBLite consensus disorder prediction 123 163 - -
Ahy3g2033 338 CDD SANT 16 61 IPR001005 -
Ahy3g2033 338 Gene3D - 70 142 - -
Ahy3g2033 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy3g2033 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy3g2033 338 MobiDBLite consensus disorder prediction 186 209 - -
Ahy3g2033 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy3g2033 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ahy3g2033 338 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 246 - -
Ahy3g2033 338 CDD SANT 71 112 IPR001005 -
Ahy3g2033 338 SMART sant 13 63 IPR001005 -
Ahy3g2033 338 SMART sant 66 114 IPR001005 -
Ahy3g2033 338 Gene3D - 14 66 - -
Ahy3g2033 338 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2033 Ahy-Chr3 46235904 46238437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2033 1 167 MYB Transcription Factor Family AT4G38620 54.651 1.51e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy3g2033 Myb_DNA-binding 1.90E-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2320 13 49754471 49757631 Ahy3g2033 3 46235904 46238437 hybridization
Ahy3g2033 3 46235904 46238437 Ahy11g3160 11 149167157 149168948 PCT
Ahy3g2033 3 46235904 46238437 Ahy1g1794 1 94234285 94236385 PCT