Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g2013 ATGGATGGTGGCGGACACTACAACCCTCGCACCGTTGAGGAAGTTTTCCGCGACTTCAAGGGTCGCAGAGCTGCTATGATCAAAGCCCTCACCACTGATGTTGAGGAGTTTTACCGGCAGTGTGATCCAGATAAGGAGAACCTCTGTCTGTATGGATACCCCACGGAACAGTGGGAAGTTAATTTACCCGCTGAAGAAGTTCCTCCTGAACTTCCCGAGCCTGCATTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGACTGGCTAACTTTAGTTGCAGTTCACAGTGATGCGTGGCTAATTGCAGTGGCTTTCTACTTTGGAGCAAGATTTGGTTTTGACAGAGCTGACAGGAAACGTCTGTTCACTATGATTAATGATCTGCCAACAATTTTTGAGGTTGTGACTGGAACTGCAAAGAAACAGTCGAAGGAAAAGTCATCAGTTTCAAACCACACCAACAGCAAATCAAAATCTAGTTCAAAAGGGCGAGGATCTGAATCGGTCAAGCAAACAAAGCAAGCAAAGGAAGAGGATGAGGGTGCAGAGGAAGATGAGGAGGAGCACGGGGAGACCCTGTGTGGTGCATGTGGGGAGCTCTATGCAGCTGATGAGTTTTGGATTTGCTGCGACATATGCGAGAGGTGGTTCCATGGCAAGTGCGTGAAGATCACGCCTGCTCGGGCTGAGCACATTAAACAGTACAAGTGCCCCACTTGCAGCAACAAGAGAGCACGGCCTTGA 750 0.4893 MDGGGHYNPRTVEEVFRDFKGRRAAMIKALTTDVEEFYRQCDPDKENLCLYGYPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLTLVAVHSDAWLIAVAFYFGARFGFDRADRKRLFTMINDLPTIFEVVTGTAKKQSKEKSSVSNHTNSKSKSSSKGRGSESVKQTKQAKEEDEGAEEDEEEHGETLCGACGELYAADEFWICCDICERWFHGKCVKITPARAEHIKQYKCPTCSNKRARP* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g2013 249 MobiDBLite consensus disorder prediction 145 170 - -
Ahy3g2013 249 Pfam PHD-finger 196 245 IPR019787 -
Ahy3g2013 249 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Ahy3g2013 249 MobiDBLite consensus disorder prediction 145 190 - -
Ahy3g2013 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Ahy3g2013 249 SMART PHD_3 195 243 IPR001965 -
Ahy3g2013 249 CDD PHD_AL_plant 195 245 IPR044104 -
Ahy3g2013 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Ahy3g2013 249 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 249 - -
Ahy3g2013 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Ahy3g2013 249 PANTHER CPG BINDING PROTEIN 3 249 IPR045104 GO:0006355|GO:0042393
Ahy3g2013 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g2013 Ahy-Chr3 44823252 44826112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g2013 1 248 Alfin-like Transcription Factor Family AT3G42790 74.900 6.36e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ahy3g2013 Alfin 1.00E-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g2013 - - jre:109009410 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2294 13 47701296 47704297 Ahy3g2013 3 44823252 44826112 hybridization