Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1980 ATGGGAAGAGGCAGAGGAGTTGCGGCTCTGAAACCCACGGCGGCGGAGGTAAACGAATCAAGGCCGATGCTAGTATTGAAGGAAGTTAGATACCGTGGCGCGAGGAAGAGACCGTGGGGAAGATTCGCCGCTGAAATCAAAGACCTGTTGAAGAAAGCAAGGGTTTGGCTCGAAACCTTCGATTCTGCCGAGGACTACCTGCGCTTACGATGCCGCCGCAAGAACACTCTAGGGACCAAAAGCCAAGACCAATTTTCTTCGCCGCTCAGGATCCAGCCCTCGATGTAG 288 0.5417 MGRGRGVAALKPTAAEVNESRPMLVLKEVRYRGARKRPWGRFAAEIKDLLKKARVWLETFDSAEDYLRLRCRRKNTLGTKSQDQFSSPLRIQPSM* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1980 95 ProSiteProfiles AP2/ERF domain profile. 30 64 IPR001471 GO:0003700|GO:0006355
Ahy3g1980 95 SMART rav1_2 30 86 IPR001471 GO:0003700|GO:0006355
Ahy3g1980 95 Gene3D AP2/ERF domain 29 74 IPR036955 GO:0003700|GO:0006355
Ahy3g1980 95 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 1 69 - -
Ahy3g1980 95 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 69 - -
Ahy3g1980 95 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Ahy3g1980 95 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Ahy3g1980 95 Pfam AP2 domain 30 64 IPR001471 GO:0003700|GO:0006355
Ahy3g1980 95 SUPERFAMILY DNA-binding domain 30 66 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1980 Ahy-Chr3 43263160 43263447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1980 1 85 AP2-EREBP Transcription Factor Family AT1G50640 53.409 2.54e-19 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ahy3g1980 AP2 2.40E-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1980 K09286 - adu:110278551 190.274