Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1973 ATGAACCTCACTTCTCATTCTTCACACAACACAACAATGGCTGCTGCGACTTCTCCCACTGTTCCTATGGAAGAAGAAGATGACGTCACAGCCACAGCCACAAACCAAAACCTTCAAACTCATCAAAACGGCGTCGTTCCTTCCTCTCCCATGATTCCCGTTCCCGACGACAAGATCGTTCTCCCTGTTGAGGTCTGCTTGAAGCCTTCCAGCACTGCTTCTATCCGTGACGTTCGTTCCGCTATCGAAAGGATGCTTGAGAAGAGGAGTTTGAGCTATTGTGATGGCCCCATTCCTCTCCCCATGGACGAACCCTTTCTCGCCGACAACGTCCACAGAATTTGTATTTGTGACACAGATGAAGGGATGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCAGTTGTCCATGTCTTTCAGCTTAGCGAGGAAGGACCATGTGAGGATATAAGCTCTGATGGCCAGAGTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGTTTAATATTCGAATCTGGTCTAAAGCAAAGGTTGTTACGTTATGCAGCTAGTGCTTTGCTCTTTACTGAAAAAGGTGTTGATCCATTCCTTGTTTCATGGAATCGTATAATTCTTCTACATGGACCCCCTGGGACTGGAAAGACTTCGTTATGTAAAGCATTAGCTCAGAAATTATCGATTCGATTCAATTCAAGATTCCCACAGTGCCAGCTTATTGAAGTGAATGCACATTCTTTATTCAGTAAATGGTTTTCTGAAAGTGGCAAGCTGGTTGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCGGCCAGGAAAGCTGCTATATCCGGTTCAGAACCTTCAGATTCTATTCGGGTTGTAAATGCATTACTAACTCAGATTGACAAGTTAAAATCGTCTCCAAATGTGATAATCCTAACCACATCCAACATAACTGCTGCTATTGATATTGCTTTTGTCGACCGAGCTGATATTAAAGCATATATTGGTCCCCCGACACTTCAAGCTCGATATGAAATATTAAGGTCTTGCTTGCAGGAATTGATGCGTACGGGGATCTTAACTAGTTTACAGGGTTGTGATAACATCACACTTCCAAGTTATGCCAGTGCAAAGGATAGGTCGAGTGCACCGGATTTTCATGAGGTTACTGCATCCATGCAACTATGCAACCAACTTCTTGAAACTGCCAAGGCCTGTGAGGGAATGAGTGGGAGGTCCTTGAGAAAGCTTCCATTTTTGGCACATGCTGCCCTTGCCAATCCTTTCGATTGCAATCCTATCAAGTTCTTATGTACAATGATTGAAACGGCAAAGAGGGAGCGTTCTGAGCTTCCTGACTAA 1431 0.4347 MNLTSHSSHNTTMAAATSPTVPMEEEDDVTATATNQNLQTHQNGVVPSSPMIPVPDDKIVLPVEVCLKPSSTASIRDVRSAIERMLEKRSLSYCDGPIPLPMDEPFLADNVHRICICDTDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIFESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRFPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAAISGSEPSDSIRVVNALLTQIDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYIGPPTLQARYEILRSCLQELMRTGILTSLQGCDNITLPSYASAKDRSSAPDFHEVTASMQLCNQLLETAKACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCTMIETAKRERSELPD* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1973 476 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 214 232 IPR001270 GO:0005524
Ahy3g1973 476 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 328 342 IPR001270 GO:0005524
Ahy3g1973 476 MobiDBLite consensus disorder prediction 1 30 - -
Ahy3g1973 476 SMART AAA_5 210 362 IPR003593 -
Ahy3g1973 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 444 IPR027417 -
Ahy3g1973 476 Pfam ATPase family associated with various cellular activities (AAA) 214 359 IPR003959 GO:0005524|GO:0016887
Ahy3g1973 476 CDD AAA 212 360 - -
Ahy3g1973 476 ProSitePatterns AAA-protein family signature. 332 351 IPR003960 GO:0005524|GO:0016887
Ahy3g1973 476 Gene3D - 153 377 IPR027417 -
Ahy3g1973 476 MobiDBLite consensus disorder prediction 1 18 - -
Ahy3g1973 476 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 52 473 IPR044539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1973 Ahy-Chr3 43171817 43177044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1973 159 377 Calmodulin-binding Proteins AT3G56690 29.911 5.87e-16 79.0