LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy3g1970	ATGCCGCAAGATTCCTCCGATCAAGACCTCGACGACGCCGATTCCGAGTTCGTTGAGGTTGACCCAACCGGTCGCTATGGTCGGTACAAGGAAGTTTTAGGGAAGGGAGCTTTCAAGAAAGTATATCGAGCATTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGATTAAGGTGGCGGATCTGCTGCGTAACTCGGAAGATTTGGAGAGACTTTATTCTGAGGTCCATCTGCTCAAGACGTTGAAGCACAAGAATATAATTAAGTTCTACAATTCGTGGGTTGACACCAAGAATGAGAACATCAACTTCATTACCGAGATTTTCACCTCGGGGACATTACGCCAATATCGTAAGAAACACAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAAGCAGATTTTGGAGGGCCTTTTATATCTTCACAGTCATAATCCTCCAGTTATACATCGAGACCTTAAGTGTGACAACATTTTTGTCAACGGGAATCAAGGGGAGGTAAAAATTGGAGATTTAGGGTTGGCAGCTATTCTTCAACAGGCCCAAGCAGCTCACAGTGTCATAGGTACCCCGGAGTTCATGGCCCCAGAACTTTATGAAGAAGAGTACAACGAGCTTGTTGATATCTACGCTTTTGGAATGTGCTTGCTAGAGTTGGTAACCTTTGAGTATCCATACGTTGAATGTTCCAATGCTGCTCAAATATACAAGAAAGTGACATCGGGAATAAAGCCAGCATCATTGGCAAAAGTGGCAGATCAAGAAGTTAAGGCATTCATTGAAAAGTGTATCGCTAATGTTTCAGAACGGTTGCCTGCAAAGGCTCTCTTGATGGATCCCTTCCTTCAGTCTGACTCTGATAGTGAAAGTGTAGGTCGTTCTTCAAGGTCTGGAACCCATCATTCAGATGCAGGAAATAGTTCTAATAATCAAGCAATTGGAAAAAGTGTTCAGGATGTTTCTGGTGATTCAAATAGGGAATTCACAGTGGAAGGTCAGAGGAAAGATATTGATACAATATTTTTAAAACTGCGAATAGCAGACTCCTCAGGTCATGTTCGGAATATCCACTTCCCTTTCGATATTGGAGCGGACACTGCAATCTCTGTTGCTAGTGAAATGGTCGAGGAGTTGGAACTTACTGATCAAGATGTCACAACTATTGCTGAGACAATTGACTCTGAAATTCGATCTCTCATTCCTGGTTGGAACCCCAGTGAAACTCCTGCTACTAATGTTCCTGAAGATTCAGCAGTTTCAGATGGCTGTACCTCTGCTGAAACTAGGAGTGTGTCTTCTCCTACAGAAAATGATTCAACCACTCCTTCTAGCAACCTTGCATTAGAAATACTACGTTCAGGTCGTAAGTACTGGTCAGACTCACCTAAGGGAGTTTGTGGAAACCCTTTATCTAGGCATGGTTCTTCAAACTTGTCCCATGTAGGTGATGCAAATGCTGAGAAAGGAAGCTTGACTGCAAATGGTGCTATTTCAGATGAACTTGAGCCTGACCAGGTTACCTGTGTCGGTGCTTACTGTGCAGAGAAGGAATGTGATAGTACTGGTGATTCCCCCTCCACCGAGAGAACTATTACCTCTGGATATTTGGAAGAGACCAGTGAAGCATCATCTCTGGAAAAAATACCTGAAAGTTTGGAAGTTTCTGAAATAGATGCCAGTAAAATAGCACTGCAACTTGAGAGTTTGTTGACAAATCAAAAAGAGGAGCTGGAAGAACTAAAGAGGAAGCAAAAATTAGCTGTCTCTAATCTTTTGAAGGAACTTTCACCAGAAATTTGTAAGAAGGTCCTAAATATATGCAACCTGCAGATGCTTGAATATGAAAATTTATAG	1863	0.4214	MPQDSSDQDLDDADSEFVEVDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQIKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSKQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQAQAAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECSNAAQIYKKVTSGIKPASLAKVADQEVKAFIEKCIANVSERLPAKALLMDPFLQSDSDSESVGRSSRSGTHHSDAGNSSNNQAIGKSVQDVSGDSNREFTVEGQRKDIDTIFLKLRIADSSGHVRNIHFPFDIGADTAISVASEMVEELELTDQDVTTIAETIDSEIRSLIPGWNPSETPATNVPEDSAVSDGCTSAETRSVSSPTENDSTTPSSNLALEILRSGRKYWSDSPKGVCGNPLSRHGSSNLSHVGDANAEKGSLTANGAISDELEPDQVTCVGAYCAEKECDSTGDSPSTERTITSGYLEETSEASSLEKIPESLEVSEIDASKIALQLESLLTNQKEELEELKRKQKLAVSNLLKELSPEICKKVLNICNLQMLEYENL*	621

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy3g1970	620	Gene3D	Phosphorylase Kinase; domain 1	11	108	-	-
	Ahy3g1970	620	SUPERFAMILY	Protein kinase-like (PK-like)	29	286	IPR011009	-
	Ahy3g1970	620	MobiDBLite	consensus disorder prediction	287	332	-	-
	Ahy3g1970	620	MobiDBLite	consensus disorder prediction	402	448	-	-
	Ahy3g1970	620	MobiDBLite	consensus disorder prediction	287	330	-	-
	Ahy3g1970	620	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	6	616	-	-
	Ahy3g1970	620	Coils	Coil	566	597	-	-
	Ahy3g1970	620	CDD	STKc_WNK	25	285	-	-
	Ahy3g1970	620	Gene3D	-	341	428	-	-
	Ahy3g1970	620	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468
	Ahy3g1970	620	Gene3D	Transferase(Phosphotransferase) domain 1	110	293	-	-
	Ahy3g1970	620	SMART	serkin_6	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy3g1970	620	MobiDBLite	consensus disorder prediction	407	448	-	-
	Ahy3g1970	620	ProSiteProfiles	Protein kinase domain profile.	27	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy3g1970	620	Pfam	Protein kinase domain	30	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy3g1970	620	Pfam	Oxidative-stress-responsive kinase 1 C-terminal domain	345	399	IPR024678	GO:0004674\|GO:0005524
	Ahy3g1970	620	PANTHER	SERINE/THREONINE-PROTEIN KINASE-RELATED	6	616	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy3g1970	Ahy-Chr3	43141783	43145355	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy3g1970	15	406	MAP Kinase Kinase Kinase	AT3G22420	54.795	2.20e-169	494

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Ahy3g1970		Pkinase	1.60E-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy3g1970	K08867		-	gmx:100301899	782.326