Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1936 ATGTCTATCATCACTGGCTTCAAATCCCTAACTACCATGGCAGAATCATGCCTTCTCTCTCCTCCTTCCTCTCTCTTCCATTCCAAACACATCACCCATTCAAATTCCAAACCCCACCACCACACTCTCTTCAAACTCGCTTCTCCATTCCCTTCCCTCTCTCTTTCTCTCACCGCAAGGCGCCATCATCACGTGCTCACTCACGTGGCCCAAACCTCCGACTGGGCCCAGCAAGAGGAAGACAACACTCTCACCTTGGAACAGCAAGAAGCTGAAGAACCTGCACTTTCCGATTGGGAACCCAGCGCTGAAATCGTAGGCGAAGCTGAAGTTGCTGAAGCCGAAGACGGAGACGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGGAGGGGATTTTGTTGAGCCACCAGAGGAGGCGAAAATCTTCGTTGGAAACTTGCCTTATGACGTTGATAGCCAGAAACTCGCCATGCTTTTCGAGCAAGCTGGAACCGTTGAAATTGCCGAGGTTATTTACAACAGGGACACTGACCAAAGTCGCGGGTTTGGCTTCGTGACAATGAGTACTGTCGAGGAAGCTGAGGCTGCTGTGGATAAGTTCAACCGCTATGATTTAGGTGGAAGACTGTTGACTGTTAACAAGGCTTCTCCAAGAGGAGAGCGACCTGAACGCCCACCCCGTTCATTCGAACAGGCTTTTAGAATCTATGTTGGTAACTTGCCTTGGGATGTTGACAATGGTCGCCTGGAGCAGATTTTCAGCGAACACGGTAAGGTTGTGAATGCTCGCGTAGTGTATGACAGAGAAACTGGACGATCACGCGGCTTTGGTTTTGTCACAATGACTGACGAGAGTGAAATGAACGATGCAATTGCTGCTCTTGATGGCCAGAGTTTGGATGGAAGGGCAATAAGAGTGAATGTTGCTGAGGACAGACCCAGACGCTCTTTTTGA 957 0.4922 MSIITGFKSLTTMAESCLLSPPSSLFHSKHITHSNSKPHHHTLFKLASPFPSLSLSLTARRHHHVLTHVAQTSDWAQQEEDNTLTLEQQEAEEPALSDWEPSAEIVGEAEVAEAEDGDEEEEEEEGEEEGGDFVEPPEEAKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEAAVDKFNRYDLGGRLLTVNKASPRGERPERPPRSFEQAFRIYVGNLPWDVDNGRLEQIFSEHGKVVNARVVYDRETGRSRGFGFVTMTDESEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1936 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 312 IPR000504 GO:0003723
Ahy3g1936 318 Gene3D - 68 222 IPR012677 -
Ahy3g1936 318 Gene3D - 223 317 IPR012677 -
Ahy3g1936 318 SUPERFAMILY RNA-binding domain, RBD 136 229 IPR035979 GO:0003676
Ahy3g1936 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 211 IPR000504 GO:0003723
Ahy3g1936 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 306 IPR000504 GO:0003723
Ahy3g1936 318 SMART rrm1_1 141 214 IPR000504 GO:0003723
Ahy3g1936 318 SMART rrm1_1 235 308 IPR000504 GO:0003723
Ahy3g1936 318 SUPERFAMILY RNA-binding domain, RBD 227 316 IPR035979 GO:0003676
Ahy3g1936 318 PANTHER RIBONUCLEOPROTEIN 5 317 - -
Ahy3g1936 318 CDD RRM_HP0827_like 141 218 - -
Ahy3g1936 318 MobiDBLite consensus disorder prediction 109 134 - -
Ahy3g1936 318 MobiDBLite consensus disorder prediction 71 137 - -
Ahy3g1936 318 MobiDBLite consensus disorder prediction 71 90 - -
Ahy3g1936 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Ahy3g1936 318 CDD RRM_HP0827_like 235 311 - -
Ahy3g1936 318 PANTHER OS02G0815200 PROTEIN 5 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1936 Ahy-Chr3 42843252 42845941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1936 138 316 Eukaryotic Initiation Factors Gene Family AT3G16380 36.458 1.06e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1936 - - adu:107478884 562.762