Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1920 ATGGAACCTTCTGAATCAGAATCAGTTGGTTCCTCCACCACAACCACCACCAAAGACCCACAATTGGGTTCTCAGAGTGAACCTTCTTCTCCTTTTCCCAATCATCATCACGATCCTCAACAATCAGAGCCAGATCTCAGTCAAAATTTGGGGTTGCAGGATGAAACTCGTGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTGAAGGATGAGGATGAAAGGGTAGCTGAAAATGAGAAGAAAGATTCGAACTTTGTAGCTGGTAGTGGAGAATATGGTGGTGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCGGAAACAGGTGAAGCACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAATGAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAGTGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAGTGGAGAAGAAGAAAGATAGAAGCAGTGGTAGAGTTCAGCAGCAATATCCACTGAGGCCTGATGCTGAAGATTGTGCTTTCTATCTTAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCACTTGGTAGGAGGAAGAACCAGGCTGTTAAAGAGAAGGTTGGGGGAGAAAGAGAAGAACCGGCTGAAAAATCGGGCCAGATAGAATGCAAGTATTATTTAAGGTCGGGAGGATGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGAAAGCCTTCAGCTGCGCCACTTTTGGAGCTTAACTTTCTTGGCTTGCCTATACGATTGGGAGAGAAACAATGTCCCTATTACATGCGCACAGGCTCCTGTAAGTTTGGAGCAAATTGCAAGTTTAATCATCCTGATCCTACTTCTGGTGGTAGAGTTGGGGATTCTGTTTCAGGATTTGGTAATGGTAATTATGTACCCCTACAAGGCGCATCACAACCATCTGGTCCCTCGTGGTCATCTTCAAAAACATTAAATGATACTGCTCCTTTTGTGCCAATGATGCTTTCGCCTAGTCAAGCGGTTTCTCCCCGAAGTCCTGAATGGAACGGATACCAGGCACCTGTCTATTTATCCGAGAGGAGTATGCACCCACCATCGGCATATGTCATGAACAACCCAACAATCGAAACACCCATGTACATGCACCAACCAAAGCAGACGCCAATTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTACTTCTTAAAAACTGGAGATTGCAAGTTCAAATCCAATTGTAAATTCCATCATCCAAAGAATCGGGTTGCAAGAATACCTCCGTGCAACCTCAGTGACAAGGGCCTGCCTCTGAGACCTAATGTATGCTCCCATTACAGCCGCTACGGGATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGGTAATAAACCCATCTCCCCCAAGTAGTCCTGGACTTGATCAGCAAACTTCTTATACAGACACGCCTAATGAGATGACTACGATGGAGGGAAATGGAGATGCCAATGATGAGGCAATTCGTCAGCCTGTTTAG 1587 0.4468 MEPSESESVGSSTTTTTKDPQLGSQSEPSSPFPNHHHDPQQSEPDLSQNLGLQDETRDELGAEFHKKLDLKDEDERVAENEKKDSNFVAGSGEYGGEELGGEGGCAPETGEAQGSDDNDGWDDDEGYGWNENVKESEVDKVSGDFDVDGDGNGDDEVEVEGDEEVEKKKDRSSGRVQQQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPLGRRKNQAVKEKVGGEREEPAEKSGQIECKYYLRSGGCKFGKACKFNHTRGKPSAAPLLELNFLGLPIRLGEKQCPYYMRTGSCKFGANCKFNHPDPTSGGRVGDSVSGFGNGNYVPLQGASQPSGPSWSSSKTLNDTAPFVPMMLSPSQAVSPRSPEWNGYQAPVYLSERSMHPPSAYVMNNPTIETPMYMHQPKQTPIEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRVARIPPCNLSDKGLPLRPNVCSHYSRYGICKFGPACKFDHPVINPSPPSSPGLDQQTSYTDTPNEMTTMEGNGDANDEAIRQPV* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1920 528 SUPERFAMILY CCCH zinc finger 420 444 IPR036855 GO:0046872
Ahy3g1920 528 MobiDBLite consensus disorder prediction 127 147 - -
Ahy3g1920 528 MobiDBLite consensus disorder prediction 487 528 - -
Ahy3g1920 528 ProSiteProfiles Zinc finger C3H1-type profile. 415 443 IPR000571 GO:0046872
Ahy3g1920 528 Gene3D - 417 491 - -
Ahy3g1920 528 SUPERFAMILY CCCH zinc finger 184 212 IPR036855 GO:0046872
Ahy3g1920 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Ahy3g1920 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 417 442 IPR000571 GO:0046872
Ahy3g1920 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 464 485 IPR000571 GO:0046872
Ahy3g1920 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 209 IPR000571 GO:0046872
Ahy3g1920 528 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 304 IPR000571 GO:0046872
Ahy3g1920 528 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 13 528 - -
Ahy3g1920 528 SUPERFAMILY CCCH zinc finger 237 260 IPR036855 GO:0046872
Ahy3g1920 528 MobiDBLite consensus disorder prediction 1 178 - -
Ahy3g1920 528 PANTHER PROTEIN PHOSPHATASE RELATED 13 528 - -
Ahy3g1920 528 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Ahy3g1920 528 ProSiteProfiles Zinc finger C3H1-type profile. 232 260 IPR000571 GO:0046872
Ahy3g1920 528 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Ahy3g1920 528 SMART c3hfinal6 232 259 IPR000571 GO:0046872
Ahy3g1920 528 SMART c3hfinal6 459 486 IPR000571 GO:0046872
Ahy3g1920 528 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Ahy3g1920 528 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Ahy3g1920 528 ProSiteProfiles Zinc finger C3H1-type profile. 459 487 IPR000571 GO:0046872
Ahy3g1920 528 SUPERFAMILY CCCH zinc finger 279 305 IPR036855 GO:0046872
Ahy3g1920 528 Gene3D - 223 308 - -
Ahy3g1920 528 SUPERFAMILY CCCH zinc finger 460 485 IPR036855 GO:0046872
Ahy3g1920 528 MobiDBLite consensus disorder prediction 56 83 - -
Ahy3g1920 528 Gene3D - 157 221 - -
Ahy3g1920 528 MobiDBLite consensus disorder prediction 493 515 - -
Ahy3g1920 528 MobiDBLite consensus disorder prediction 1 54 - -
Ahy3g1920 528 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1920 Ahy-Chr3 42691383 42694887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1920 180 486 C2H2 Transcription Factor Family AT3G02830 41.846 1.74e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy3g1920 zf-CCCH 7.50E-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1920 - - gmx:100809626 571.622