Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1918 ATGCGTCCCGAGGCACTAGTGTGTGAAGAATGCGCCTGCAGGTGTGTTTTGTTGCACGGAAACGAGAAGAAAAAATCGTCACTTTTTCCTCCTTCTTTCTTCAAGATCATGTTTGACTCGAACTTTTCCACTATTATGTATCTTCCTGACAAGTTTAAACCTGCTGTAGCTGCCTCCGTTAATAAGAAAATCATTCTTGATGACAAAAGTGGGGAGAGATGGAAAGTAACTTTATCCGAAGCCGGTAGTCACTTGGCTTTCAAGGAAGGATGGAATAAGTTTTCGTCGGACCATGGACTTGAACGTGGAGATATTCTGGTATTCCATCATGTTACTGATGTGCACTTTTATGTTACAATCTATGATAAATATGCTTGTGAAAAGCTTTGTTGTTCGAATACGAGAAATAAGACAAAACGTAGAAGGGACAGTAGTGTCTCTCCAGTTAGAGATGTCATGTTGGCTACACCAGATCAAAATGCGTCGGTTGTTTCTGAGCCAGATGCTAAAAAGACAAATAGTCAGAACAAAGTGGTTGGTGTAGGAGGAACACCAAATAATGTAGAGAATATTTCAAAACATGATAAGAGCAATGGAAGTGTCAAATCTACGAGAATGACAGAAAACTATGACAACACTGCGAAAATTACAGCCAGAGAATCAAGAGTTTCTCCTGTCAACTACAAATTGTGCATGAATCCAGTCGATGCAATTCTATGCGACAACTCTCCTTCATTTGAAGAGAGATTCAGAGGAGCTGCTGCATTTTTGTCAGAAGCTGAACTATCTGGAAAAAGGGATTCTATTAGAAATACTGACAGAAGCACATACGACAATACTTCTACTTGCAAACTTGGAGAAAGAAAAGAGAAGAATGTTTTGAAAAGGGAAGTTAGAGAGTTCCAATATACTGAGGACTTAGGTGATAATAAGGTGGCAATGTCCAAGAAAGAACATGGCTTTCATATTGATGGATGTCTCAACACCAAACCAATGTTTAATGCCACACCGAATATCTCAGATGCTACTCGACTCAAAAGTGATCCTATGGCAACGTCCAAGGGAAAACATGGATTGCAAATTGATGGATGCCCCAATACCAAAAATATTGTCAATAATGGCATACCAAGGGTCTCAAGTGCTATTCAAAACGGCAAAATCTTAAAAAAGATTAAGAGCGAGCAGGCAGACAGGAATCCCAGTGAGGAGTGCACTTTTAAGGACAAAGTGTGTGCAAAAGGTGAAATGCCCAAAAGGATTAAAAAAGAGCCGCGTATGGATATGACTTACAACGTGTCCAGATTCAAGGATGAATTCGAAGCCAGAGGTATTGAAGTTCCCAAAGGCTTGCCAAAGGTTATCAAGAAAGAGTTTGAGAAGAGTTCACACAAGACTGAACAAAATGATGATAACGATGATGACAGTGATAACATTCAATTGGCAGAAGTTGTGCGCTGCGTGGTGCCCGATCATAATGATAAATTTCTTGAATTGCCTACAAACTTGCATCAGTGCCGGAACTACAAAAATAACAGGATGGTGGTGATCCTGCGAGATCCGCAGAGGAGACTATGGCCGGTTCTTTACCATGATCTTCATGATAAAAAAATGCATGGTACAAAAGCCTTTTATCTGATAAAAGGGTGGTCACAATTTTACAGAGCCAATAATGTTCAACCAGGAGATTTGTGTACTTTTGAACTTAAGGAGGAGGCTAAACACATCTTCAATGTAGATATAAACCACAATTAA 1752 0.3973 MRPEALVCEECACRCVLLHGNEKKKSSLFPPSFFKIMFDSNFSTIMYLPDKFKPAVAASVNKKIILDDKSGERWKVTLSEAGSHLAFKEGWNKFSSDHGLERGDILVFHHVTDVHFYVTIYDKYACEKLCCSNTRNKTKRRRDSSVSPVRDVMLATPDQNASVVSEPDAKKTNSQNKVVGVGGTPNNVENISKHDKSNGSVKSTRMTENYDNTAKITARESRVSPVNYKLCMNPVDAILCDNSPSFEERFRGAAAFLSEAELSGKRDSIRNTDRSTYDNTSTCKLGERKEKNVLKREVREFQYTEDLGDNKVAMSKKEHGFHIDGCLNTKPMFNATPNISDATRLKSDPMATSKGKHGLQIDGCPNTKNIVNNGIPRVSSAIQNGKILKKIKSEQADRNPSEECTFKDKVCAKGEMPKRIKKEPRMDMTYNVSRFKDEFEARGIEVPKGLPKVIKKEFEKSSHKTEQNDDNDDDSDNIQLAEVVRCVVPDHNDKFLELPTNLHQCRNYKNNRMVVILRDPQRRLWPVLYHDLHDKKMHGTKAFYLIKGWSQFYRANNVQPGDLCTFELKEEAKHIFNVDINHN* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1918 583 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 580 IPR044837 -
Ahy3g1918 583 MobiDBLite consensus disorder prediction 159 194 - -
Ahy3g1918 583 MobiDBLite consensus disorder prediction 159 204 - -
Ahy3g1918 583 SUPERFAMILY DNA-binding pseudobarrel domain 30 126 IPR015300 -
Ahy3g1918 583 Pfam B3 DNA binding domain 497 572 IPR003340 GO:0003677
Ahy3g1918 583 Pfam B3 DNA binding domain 33 123 IPR003340 GO:0003677
Ahy3g1918 583 ProSiteProfiles B3 DNA-binding domain profile. 481 583 IPR003340 GO:0003677
Ahy3g1918 583 SMART B3_2 33 124 IPR003340 GO:0003677
Ahy3g1918 583 SMART B3_2 483 579 IPR003340 GO:0003677
Ahy3g1918 583 Gene3D - 479 583 IPR015300 -
Ahy3g1918 583 Gene3D - 27 126 IPR015300 -
Ahy3g1918 583 ProSiteProfiles B3 DNA-binding domain profile. 31 124 IPR003340 GO:0003677
Ahy3g1918 583 CDD B3_DNA 492 580 IPR003340 GO:0003677
Ahy3g1918 583 CDD B3_DNA 31 122 IPR003340 GO:0003677
Ahy3g1918 583 SUPERFAMILY DNA-binding pseudobarrel domain 486 573 IPR015300 -
Ahy3g1918 583 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 10 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1918 Ahy-Chr3 42638809 42643591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1918 33 127 B3 DNA Binding Superfamily AT4G01580 28.125 7.75e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy3g1918 B3 1.90E-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1918 - - adu:107478866 1179.47