Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1887 ATGGCCTATGATCCCTTCACAAGAGAGATGCATCCACATTTTTATAAGGTTTCAAGCATTGGACTTTTGACTCAATACTTTTCCAACCTTCCCTTTCATTCCCTCTTCTCCTCTCATTTGGCTGCTTCTACTTTTCTTTTATTTCTCACCCTCCCATATATATTCTCTATCTCTCTCTGTCACACACTCTCTCTCAACATCCTTCTCATAATTCATGTCTTCTTTGCTACTACTACTTTTCAAGAACATATAACTTGGCAGGAACATACAAGATCCAACACAATAATAATTTCCCTGCTCCCTCAATCCCCCCTATATGCAGGTGTGTTCTTCCTGCCAGAAGTCGCCAGAACCGGTTATCTTCGCTCTATAGTGCAGTCTGTTGGCTGCGCCTACATTTGTCTCTGGTCCTTTGATCCCACTTCTTCTCCTAATAATCGGTTGTTCTTCTTGGATGGTTTCTACAATAACGTCAGAAACAACCAACAAGCAAGCTCTTCATTGGGGAGTGTGGCGCAACAACTCTTTAATCAGTTCAGGACTTTAAGATTTGATGCAAATGATGACCGTATTCCTGGACTAGCTTTTAGGAACAACCGTCCGTACGTAGAGGTGCAGCAACCGGAACTTCTCAGACTCGCATGGACTCAAATACAAAAACAATTCTTTCAGGAAGCAAGGATTAAGACTGCTGTATTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAATTTGTCTCAGGCTGAAATTCAAACAGCACTTAGCAGTTTGTTCCAGGAAGATTTCTCTTCTGGTCGGCAAATAATGGATCATCAGAATAATCCACCCTCATCATCTTCATCTTCTTTGAGATCATTATCCACAACAGCTGGCAGCCCTGAATACTCCTCACTCCTATTCAACATTCCTCCGGCCGGAGCTACCGCGGGAGCAATAGTACCTAACACAATGTCTCCTTTGTCATCTAACACACAATCAGCATTGCTAACTAATTACGTATTCCCGAGTCATCACCAGGAGATCGAAAACGAGACACTAATGAGAGTGTTCCTGAACGCTATATCACCACAACAGCATCAAAACTTGCCTTATAACATCACTGTGGTGCACCCTGAGAGTAGCGCTTTCAAGAGGTACAGGACGGAACCGGAACCGGGACCGGAACGGGCGCCGGAGAGTTTGCGGAGTAGGCAAAGCCTTATGAAGAGATCGTTAGCGTTCTTTAGGAGCATCAATGCTATGAGAATAAGGGAACGGATTCAAGCCACTCGCCCCTCTAGCACACAGCTTCATCATATGATAGCTGAGAGAAGAAGGCGCGAGAAGCTCAACGATAATTTTCAGGCTCTTAGAGCATTGCTTCCTCCCGGAACTAAGAAAGACAAAGCGTCTATACTAACAACTGCAAAGGAGACACTGAGTTCATTGATGGCGGAAATTGAAAAGCTGAGGATAAGAAATCACGAGTTAGAATCACGTTTGCCTGAAAGCAGCAAAGAATCAAGCGCTGCCGATCAAGAAATTAGCAAAACTATGTTATTGGTGCCACCAAACGAGAGATTTCATGTTCAAATTTCAGATGTGCCACAATCATCATCATCATCATCGTCAGAAGAGAGAAGGGTGGATTTGCATGTCGCTTTGAGGGGGCAAATTTCTCAGATTGATGCGGTGATTCGGTTATTGGAGTTCTTGAAACTGGCTCAGAATGTGAGCTTGATTACCATGAGAACAAATACCAATAATGTTGGTCAAGGGAATAATAATTATATTAATCAACTAACATTCAGATTAAGGATTCTTGAGGGAAGTGAATGGGATGTTTCTGCCTTCCAGGAAGCAGTGAAAAGAGTTGTAGGTGATTTGGCACAGTTCCAAGTTGACCATTAG 1899 0.4313 MAYDPFTREMHPHFYKVSSIGLLTQYFSNLPFHSLFSSHLAASTFLLFLTLPYIFSISLCHTLSLNILLIIHVFFATTTFQEHITWQEHTRSNTIIISLLPQSPLYAGVFFLPEVARTGYLRSIVQSVGCAYICLWSFDPTSSPNNRLFFLDGFYNNVRNNQQASSSLGSVAQQLFNQFRTLRFDANDDRIPGLAFRNNRPYVEVQQPELLRLAWTQIQKQFFQEARIKTAVFMGCNKGEIELGFLNLSQAEIQTALSSLFQEDFSSGRQIMDHQNNPPSSSSSSLRSLSTTAGSPEYSSLLFNIPPAGATAGAIVPNTMSPLSSNTQSALLTNYVFPSHHQEIENETLMRVFLNAISPQQHQNLPYNITVVHPESSAFKRYRTEPEPGPERAPESLRSRQSLMKRSLAFFRSINAMRIRERIQATRPSSTQLHHMIAERRRREKLNDNFQALRALLPPGTKKDKASILTTAKETLSSLMAEIEKLRIRNHELESRLPESSKESSAADQEISKTMLLVPPNERFHVQISDVPQSSSSSSSEERRVDLHVALRGQISQIDAVIRLLEFLKLAQNVSLITMRTNTNNVGQGNNNYINQLTFRLRILEGSEWDVSAFQEAVKRVVGDLAQFQVDH* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1887 632 Pfam Helix-loop-helix DNA-binding domain 434 479 IPR011598 GO:0046983
Ahy3g1887 632 SMART finulus 436 485 IPR011598 GO:0046983
Ahy3g1887 632 Coils Coil 469 503 - -
Ahy3g1887 632 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 500 IPR036638 GO:0046983
Ahy3g1887 632 MobiDBLite consensus disorder prediction 270 291 - -
Ahy3g1887 632 CDD bHLH_AtbHLH_like 435 487 IPR045239 -
Ahy3g1887 632 Gene3D - 429 504 IPR036638 GO:0046983
Ahy3g1887 632 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 109 625 IPR044658 -
Ahy3g1887 632 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 109 625 - -
Ahy3g1887 632 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 430 479 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1887 Ahy-Chr3 41876544 41884656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1887 109 626 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.130 4.76e-100 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ahy3g1887 HLH 6.90E-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1887 - - ahf:112790359 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g3123 11 148891367 148894521 Ahy3g1887 3 41876544 41884656 PCT
Ahy1g1838 1 94847082 94850701 Ahy3g1887 3 41876544 41884656 PCT
Ahy3g1887 3 41876544 41884656 Ahy11g3123 11 148891367 148894521 PCT
Ahy3g1887 3 41876544 41884656 Ahy1g1838 1 94847082 94850701 PCT