Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1869 ATGATGATACCAAGTTATCGTTATTCTCATCATCATCCTATTCCTTTTGATCTCAATGAAGAACATCACCTCTTCACTACTACTACATATCCTCAACTCTCTTCTCCTTCTTCTTCTTTATCATCTTATTCTTATTGGGACCAACATCCAAACCACTTACAAATAACTCATCAACAGGCTGAGAAGATTCATGTTCCTTCTAGTGGAGGATCATGGGATCATATTCATGACCACAGAAAAAAAGAAGAAAAAGAAGAAGAAGAAGAAGAGGATGGAAACAAGAAGAGTAGTAAACTGCTCAAGTTGAAAATTTTGAAGAAAGAAGAAAGGAATGAAAATCATCATCTTGATAATCAAGCTCATCATGATGAGGAGGATCATGGTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATCATGGGTGGTTCTGATACTAATAATTTCAGGTTAAGGTTTGATGAAGAGGGACCAAAGCAGCAAGCGCCGCTATCCCCTTTAGGAACTGATAATAGCAGCAGCAACAGTAACAACAACAACTCTTCTTCAAACCGTCATGAAAATAATAATAATATGATTGTTAGGGTTTGTTCTGATTGCCACACCACAAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCGAGGAGAGCTGCGGCGGTGGCGGCCGCGGCGGAGGTTGCAGCATCAGAGAACGATACAACTCTCATGGCTTCTACTGATGATGATGATGGTATGAAGAAGAAAGAAAAGAAGTTACACAAGCACAACAACAAAGATAAGAAGTTGAAAGCCAAGTGTAGTGCACCAAATCAGTTGAAAAAGAAGCACAAAATTGGAACCAATAACAATAATAATACTAATAAATTATCTCATAGAGGAAGAAAGAAGGTTGGTTTTGAAGACTTGACAATAAGTTTGAGCAAGAACTTGGCTTTAAATGTGTTCCCTCATGATGAGAAAGAGGCTGCAATCTTGCTCATGGCCTTATCCTATGGTTTACTTCATGGATTTCCCTCAGATCGTTACTTAGATTAA 1077 0.3909 MMIPSYRYSHHHPIPFDLNEEHHLFTTTTYPQLSSPSSSLSSYSYWDQHPNHLQITHQQAEKIHVPSSGGSWDHIHDHRKKEEKEEEEEEDGNKKSSKLLKLKILKKEERNENHHLDNQAHHDEEDHGSVKWMSSKMRIMGGSDTNNFRLRFDEEGPKQQAPLSPLGTDNSSSNSNNNNSSSNRHENNNNMIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAAVAAAAEVAASENDTTLMASTDDDDGMKKKEKKLHKHNNKDKKLKAKCSAPNQLKKKHKIGTNNNNNTNKLSHRGRKKVGFEDLTISLSKNLALNVFPHDEKEAAILLMALSYGLLHGFPSDRYLD* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1869 358 MobiDBLite consensus disorder prediction 109 128 - -
Ahy3g1869 358 MobiDBLite consensus disorder prediction 156 189 - -
Ahy3g1869 358 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 230 - -
Ahy3g1869 358 SMART GATA_3 190 241 IPR000679 GO:0006355|GO:0043565
Ahy3g1869 358 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 2 350 - -
Ahy3g1869 358 Coils Coil 259 279 - -
Ahy3g1869 358 ProSiteProfiles GATA-type zinc finger domain profile. 194 226 IPR000679 GO:0006355|GO:0043565
Ahy3g1869 358 MobiDBLite consensus disorder prediction 163 189 - -
Ahy3g1869 358 Gene3D - 192 236 IPR013088 GO:0006355|GO:0008270
Ahy3g1869 358 MobiDBLite consensus disorder prediction 71 100 - -
Ahy3g1869 358 MobiDBLite consensus disorder prediction 288 302 - -
Ahy3g1869 358 CDD ZnF_GATA 195 227 IPR000679 GO:0006355|GO:0043565
Ahy3g1869 358 Pfam GATA zinc finger 196 229 IPR000679 GO:0006355|GO:0043565
Ahy3g1869 358 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 2 350 - -
Ahy3g1869 358 ProSitePatterns GATA-type zinc finger domain. 196 221 IPR000679 GO:0006355|GO:0043565
Ahy3g1869 358 MobiDBLite consensus disorder prediction 284 305 - -
Ahy3g1869 358 MobiDBLite consensus disorder prediction 57 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1869 Ahy-Chr3 39899999 39903181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1869 100 350 C2C2-Gata Transcription Factor Family AT4G26150 36.260 8.71e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy3g1869 GATA 4.00E-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1869 - - adu:107478822 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2179 13 41897769 41900288 Ahy3g1869 3 39899999 39903181 hybridization
Ahy11g3106 11 148682940 148684662 Ahy3g1869 3 39899999 39903181 PCT
Ahy1g1863 1 95212695 95214082 Ahy3g1869 3 39899999 39903181 PCT
Ahy3g1869 3 39899999 39903181 Ahy11g3106 11 148682940 148684662 PCT
Ahy3g1869 3 39899999 39903181 Ahy1g1863 1 95212695 95214082 PCT