Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1864 ATGGAAGATGAAAAAGCCTGCATCACAAGTCTAACTCTGGGTTTGGGAATTGGAGGAGGAGGAGGAGGGTATCCCCCAAAGAAGAAGCAGAAAATGATGATGATAATGAAGAACAAGCCTATTAAGCCTGTGCCTTCTCTGGACCTAACTTTTGGTGATGATGAAGCTTTTCCGAAAGAAGCCATTGATGATGATGATGATGATGATGATCGAGAAGAAGGGTTATTCATCTCTTTGAATAATAAGAGAGTCGGTGAAGAACACAGTTACAATAATAATAAGCACTGCCCGAATGGAAAAAACAGAGATGACAGCTATAATGATGAGAATAATAATAATTATTATTGCAGCAGAAAGAAACTGAGACTCACCAAGGAGCAATCAGCTTTGCTTGAAGAAAATTTCAAGAATCATACCACTCTTAACCAAGCTCAGAAACAAGCACTTGCTAAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACAAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTCTTGAAGAAATGCTGTGAGAGGTTAACCGATGAGAATCTAAGGTTGAAGAAGGAATTGCAGGAGCTACGTGCAATCAAAGCTGGACCAACACAATCACCAACACCGCCATTGTACATTCAATTACTCTCTTCTAAATCTTCACCCTTGACTATTTGTTCTTCTTGTGAGGAGCTATTGAAGAAGACCAAACAAGAAAATATATAA 750 0.3893 MEDEKACITSLTLGLGIGGGGGGYPPKKKQKMMMIMKNKPIKPVPSLDLTFGDDEAFPKEAIDDDDDDDDREEGLFISLNNKRVGEEHSYNNNKHCPNGKNRDDSYNDENNNNYYCSRKKLRLTKEQSALLEENFKNHTTLNQAQKQALAKQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLTDENLRLKKELQELRAIKAGPTQSPTPPLYIQLLSSKSSPLTICSSCEELLKKTKQENI* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1864 249 Pfam Homeobox associated leucine zipper 174 207 IPR003106 GO:0006355|GO:0043565
Ahy3g1864 249 SMART halz 174 217 IPR003106 GO:0006355|GO:0043565
Ahy3g1864 249 Pfam Homeodomain 118 172 IPR001356 GO:0003677
Ahy3g1864 249 Gene3D - 112 179 - -
Ahy3g1864 249 CDD homeodomain 118 175 IPR001356 GO:0003677
Ahy3g1864 249 Coils Coil 173 207 - -
Ahy3g1864 249 SUPERFAMILY Homeodomain-like 110 175 IPR009057 -
Ahy3g1864 249 MobiDBLite consensus disorder prediction 87 111 - -
Ahy3g1864 249 PANTHER - 72 244 - -
Ahy3g1864 249 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 72 244 - -
Ahy3g1864 249 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677
Ahy3g1864 249 SMART HOX_1 116 178 IPR001356 GO:0003677
Ahy3g1864 249 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1864 Ahy-Chr3 39605231 39607153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1864 107 240 Homeobox Transcription Factor Family AT4G37790 64.179 3.51e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ahy3g1864 Homeodomain 4.60E-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1864 K09338 - gmx:100778922 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2169 13 41601033 41602909 Ahy3g1864 3 39605231 39607153 hybridization
Ahy1g1873 1 95281499 95282599 Ahy3g1864 3 39605231 39607153 PCT
Ahy3g1864 3 39605231 39607153 Ahy1g1873 1 95281499 95282599 PCT