Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1835 ATGATGAGCAACACCATTCTTGTTTTCTTTTTCTTCTTCTTTACAACTCTGCAGCAATCCTACTCTGAAAACAATGACACCTCATACTCCATTTGCAGCAAACCATTCAGCTGCGGAACACGCATCACCAACGCATCCTACCCTTTCTGGGGAGGGAACAGACCCCAGTTTTGTGGAACCAATGGTTTCAAACTCACCTGCACCAACAACACTACTTCACTTCAAATTGCTTCGCAAAAGTTCCATGTACTTGCCATAAACCAAACTCAGAGTACCATGAGACTCGTCAGAACAGACTTTGTCTATGATCGCTGTTCTTCCAACCTCACCAACACTTCTCTCAATGGAAGTCCCTTTCATTTTCTCCCAAACACTCTTCACAATATCACTATATTCTACGATTGTCCATCTGGGGATCATTACACCAACAATTTTACGTGCCAGAATGATAGCAGCAAACGTGGTTTCTATGCTGTCAATGTAACTCGGGCTCAGCAGTTTCGGAACTGTGGGGTTAGTGTTCAAGTGCAAGTTTCAGGTTCTGTAGGGAATAATCTCAAGGGAGCATTGGATGAAGGGTTTGATGTGCAGTATGATGCAGACTTGTCTTCAAAGTGCAAAACATGCACGGAATCTGGAGGAGTATGTGGCACCAATAACGAAACTGATTCCTCTCAGTTTTCATGTTATTGCCTCACTGGAACTCATGCTTCTGCTTGTTCTTCTCATAAAAGTAGTTCGAAGCACAAAGTCTTGAAGCTAGTTTTAGGTTTCCTAGGAACTGGAATTGGACTACCTCTGATTGCTGTGATCATATGCCGCAATAAAGCTAAGGTGTGGAAGTTCATAAAGAATCAATTAGGATTGATGAATAAGCATGATCGAAATATAGAAGCCTTTCTAGAAAGCCAAGGCCCACTTGGTATAAAAAGATATAATTTCTCTGACGTGAAGAAAATGACCAACTCCTTCAAAGTCAAACTTGGAGAAGGAGGTTATGGTTCTGTTTACAAGGGAAAATTACCCAATGGTTCCTCTGTGGCTGTAAAGATGCTCAATGACTCCAAAAGGAATAACGGCGAAGAATTCGTCAATGAAGTTGCCAGCATTAGCAAAACATCTCATGTTAATGTTGTCACTCTTGTCGGATTTTGCCTCGAAGGAAGCAGAAAAGCTCTTATTTATGAATTCATGCCTAATGGTTCTCTCGAAAAATTTGTTCACAAAAAGGCCGATCAAAGCACTCCGGCCCTGAGTTGGGACAAGTTGTACCAGATTGCAATCGGGATAGCTAAAGGATTGGAGTACTTGCACAAAGGATGCAACACTAAGATTGTGCATTTTGATATTAAGCCTCATAATATTCTCTTGGACGAAAATTATCGTCCAAAGATATCAGATTTTGGACTAGCTAAGCTCGGCACAAAGGATGAGAGCATTATGTCAATGTCATATGCTAGAGGCACAGTTGGATATGTGGCTCCGGAGATGTGCAACAAGAGTTTCGGAGGTGTATCTCATAAATCTGATGTTTATAGCTACGGAATGATGCTGCTAGAAATGGTTGGAGGGCAGAAGAATGCGAATGTTGAAGCGAGTCGGTCGAGCGAGATATACTTTCCACAATTGGTGATTTACAAGAAGCTTGAGGTTGGGAGTGACTTGGGGCTTGATGGGGTGATGAGCACAGAAGAAAATGAGTTGGCGAAGAAAATGATTATGGTGGGTTTGTGGTGCATTCAGACAATTCCCTCTCAAAGGCCAACCATAAGCAGAGTGATTGACATGTTGGAAGGTAGCATGGATTCTATGGAAATGCCACCAAAACCAACCATGTCATCTCCTCCAAGATCCACAACAGACTTTTCCACTGCATCATTGTCAGGGGATAGTTGTTGA 1899 0.4218 MMSNTILVFFFFFFTTLQQSYSENNDTSYSICSKPFSCGTRITNASYPFWGGNRPQFCGTNGFKLTCTNNTTSLQIASQKFHVLAINQTQSTMRLVRTDFVYDRCSSNLTNTSLNGSPFHFLPNTLHNITIFYDCPSGDHYTNNFTCQNDSSKRGFYAVNVTRAQQFRNCGVSVQVQVSGSVGNNLKGALDEGFDVQYDADLSSKCKTCTESGGVCGTNNETDSSQFSCYCLTGTHASACSSHKSSSKHKVLKLVLGFLGTGIGLPLIAVIICRNKAKVWKFIKNQLGLMNKHDRNIEAFLESQGPLGIKRYNFSDVKKMTNSFKVKLGEGGYGSVYKGKLPNGSSVAVKMLNDSKRNNGEEFVNEVASISKTSHVNVVTLVGFCLEGSRKALIYEFMPNGSLEKFVHKKADQSTPALSWDKLYQIAIGIAKGLEYLHKGCNTKIVHFDIKPHNILLDENYRPKISDFGLAKLGTKDESIMSMSYARGTVGYVAPEMCNKSFGGVSHKSDVYSYGMMLLEMVGGQKNANVEASRSSEIYFPQLVIYKKLEVGSDLGLDGVMSTEENELAKKMIMVGLWCIQTIPSQRPTISRVIDMLEGSMDSMEMPPKPTMSSPPRSTTDFSTASLSGDSC* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1835 632 ProSiteProfiles Protein kinase domain profile. 322 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g1835 632 MobiDBLite consensus disorder prediction 615 632 - -
Ahy3g1835 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Ahy3g1835 632 Pfam Wall-associated receptor kinase C-terminal 159 231 IPR032872 -
Ahy3g1835 632 SUPERFAMILY Protein kinase-like (PK-like) 303 598 IPR011009 -
Ahy3g1835 632 Gene3D Transferase(Phosphotransferase) domain 1 398 609 - -
Ahy3g1835 632 Pfam Protein kinase domain 325 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g1835 632 SMART serkin_6 322 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ahy3g1835 632 Gene3D Phosphorylase Kinase; domain 1 298 397 - -
Ahy3g1835 632 CDD STKc_IRAK 328 599 - -
Ahy3g1835 632 Pfam Wall-associated receptor kinase galacturonan-binding 32 97 IPR025287 GO:0030247
Ahy3g1835 632 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 628 IPR045874 GO:0004672
Ahy3g1835 632 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Ahy3g1835 632 MobiDBLite consensus disorder prediction 601 632 - -
Ahy3g1835 632 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 4 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1835 Ahy-Chr3 37882638 37886205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1835 32 612 Receptor kinase-like Gene Family AT5G38260 41.244 1.36e-143 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ahy3g1835 Pkinase 4.90E-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1835 - - vra:106766588 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2131 13 39829581 39833120 Ahy3g1835 3 37882638 37886205 hybridization
Ahy3g1835 3 37882638 37886205 Ahy15g2749 15 144683374 144691996 PCT
Ahy15g2754 15 144768332 144771506 Ahy3g1835 3 37882638 37886205 PCT
Ahy5g2502 5 100046221 100049954 Ahy3g1835 3 37882638 37886205 PCT