Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1802 ATGAGCATAGACATGAAAGAAGCAGCTGCAACTGCAACAACTGCAAGTGCCTTGGGTGCCAAGACGGCCAGGGCTTGCGACAGCTGCTTACGGAGGAGGGCACGGTGGTTCTGCGCTGCAGATGATGCATTCCTCTGCCATGCCTGCGACAACTTGGTCCACTCCGCGAACCAGTTAGCGAGCAGGCACGAGAGGGTTAGGCTTCAAACGGCGTCGTGCAAGCTCACCAACAAGGTAACCACCGCACACGCATGGCACAGTGGGTTCACGCGCAAGGCAAGAACACCACGCCACAACAACAACAAGCACTTAGCCTTACAACAAAGGCTTAAGGACCAAGTTTTATTCAACACCGCTTGTGTTCTTCCCGTTGTGCCGGAGCTTGGAGTTGAAGAAACAGCTCTTCTGGATGATCATGAGAGTGAGGAGCAGCTGCTGTGTCGCGTGCCCGTGTTTGACCCTTTCGATGCAGAGCTTTGCAATGATGTGTACAGTGAAGTCAGGGACGAGAAGAATCACGAAGAACGAGGTTGTTGTGATGACTTGGAGAGCTTCTCTGAGTTTCTGCCATCGGATATGGATCTTGCTGAGTTTGCTGCTGATGTTGAAACCCTGCTTGGAAGTGGGATTGATGAAGATTCATTAGGAATTGATTGCAAAGAAGAAGTTCAAAGAGAAGATGCATGCGTTAGAGCCGAAACCACCATTAATATTAAGGAGGGTGCAATGGTAATGGTAAAGGTGAAGGATGAGGAGCTTGATTCAGATACAGCAAGTCATCTTCAGTCAGTTTTTGACATCACAAACGATGACGAATTTGATTGGAATATCGAATCGGTGCTCTTATCGGCGGAGGAAAAGGCGACCACTGCCGCACCAGTAAGTAATAATAGTGATAGTGTTGGTGAAGAGAAAAAGAGGGACATATTTTTGAGACTAAACTATGAAGAGGTTATAAATGCTTGGGCAAGCCAAGGTTCTCCGTGGACAACAGGAACCCCTCCTCCGTTCAACCCTCATGATCATTCCTGGCTAAATTTCTTGGATCCAAGTGGTGGAGATGTTCATCAGTGCTCTTCTTATGGGGATGGCAGAAGCGTGAGGGGACATGTTGGAGATGGGGGAAGAGAAGCAAGAGTATCTAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCTAAGAAGATAAGATATGAAGTGAGGAAACTGAATGCGGAGAAGAGACCTAGAATGAAAGGTAGATTTGTCAAGAGATCATGCCTTGTTGGAGGAGCCACATCTTCCTTTCAACCCTCCTATAACTGA 1305 0.4774 MSIDMKEAAATATTASALGAKTARACDSCLRRRARWFCAADDAFLCHACDNLVHSANQLASRHERVRLQTASCKLTNKVTTAHAWHSGFTRKARTPRHNNNKHLALQQRLKDQVLFNTACVLPVVPELGVEETALLDDHESEEQLLCRVPVFDPFDAELCNDVYSEVRDEKNHEERGCCDDLESFSEFLPSDMDLAEFAADVETLLGSGIDEDSLGIDCKEEVQREDACVRAETTINIKEGAMVMVKVKDEELDSDTASHLQSVFDITNDDEFDWNIESVLLSAEEKATTAAPVSNNSDSVGEEKKRDIFLRLNYEEVINAWASQGSPWTTGTPPPFNPHDHSWLNFLDPSGGDVHQCSSYGDGRSVRGHVGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSCLVGGATSSFQPSYN* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1802 434 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 13 424 - -
Ahy3g1802 434 Pfam CCT motif 376 418 IPR010402 GO:0005515
Ahy3g1802 434 Pfam B-box zinc finger 23 66 IPR000315 GO:0008270
Ahy3g1802 434 CDD Bbox1_BBX-like 25 68 - -
Ahy3g1802 434 SMART bboxneu5 21 68 IPR000315 GO:0008270
Ahy3g1802 434 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 13 424 - -
Ahy3g1802 434 ProSiteProfiles Zinc finger B-box type profile. 21 68 IPR000315 GO:0008270
Ahy3g1802 434 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1802 Ahy-Chr3 36438488 36440390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1802 13 418 C2C2-CO-like Transcription Factor Family AT1G25440 44.860 3.53e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ahy3g1802 zf-B_box 2.00E-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1802 - - adu:107478728 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2097 13 38661258 38663168 Ahy3g1802 3 36438488 36440390 hybridization
Ahy3g1802 3 36438488 36440390 Ahy15g2806 15 145869239 145871441 PCT
Ahy3g1802 3 36438488 36440390 Ahy5g2462 5 99250718 99252871 PCT
Ahy15g2806 15 145869239 145871441 Ahy3g1802 3 36438488 36440390 PCT
Ahy5g2462 5 99250718 99252871 Ahy3g1802 3 36438488 36440390 PCT