Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1788 ATGGACTTAGAAGAGAAATTCGTTTGTAAAGTTTCTGGTGTGCAAAGCCTCTCTTCCAGTGTGCAAAGTACTCCCGAAAAAAATGGCCATTCTGATGATGCTTCAAGAAGTTCAGAACTCCTTCAAGAGTTTGTGAAGGCTGGTCCGAAGAAGGAACTTCTTCCAACGTGCTTTGCTAAGGACCATAAGAAAGTTACTGCAAAAGGAAGGATGGCTGAAACTAAGTCAACTGGTAAGACAACTAAGAAACAAGATTCAAAAAAAGCTTCCAATGTTGGAAATCCGCCTTTCAGGAAGCAAAATCGGAAGGCTGAAAACCCCATGCGGATCTTTCCTAATCCTGACCAGACTTCTGAATCTGGACATTCTAACTCTTGGATCTGCAAAAATGCTGCCTGTAGGGCTGTTCTATCTATAGATGACACATTTTGTAGACGGTGTTCTTGTTGTATTTGTCACCTTTTTGATGATAACAAAGATCCTAGTCTTTGGTTGGTATGCTTGTCTGAATCTACTCAAGGGGACTATTGTGGATTGTCTTGCCATATCGAGTGTGCTCTCAAACATGAAAAAGTAGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCATCATGTGGCAAAGTTACTGGGATACTTGAATGCTGGAAGAAACAGCTAACTATTGCAAAGGATGCTAGACGTGTAGATGCACTCTGTCACAGGATATATTTGAGCTACAGGCTCTTGGATGGGACTTTGAAATTTAGAGAGTTGCATGAACTGGTACAAAAGGCGAAGGCTAAACTGGAGACAGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAGATGGCACGAGGCATTGTCAGCAGACTCCCTATAGCTGGTGATGTGCAGAAATTCTGCACTCTTGCTATTGAGAAAGCTGACAGATGGCTGGCTAGTGTTCCAAATGTGAATCCTGATTCCAGAGAGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCCTCTGTCAAAATCATTTTACTTGAAGTATCAAATGTGGCGGCTGAGAACAGTAAGGGATACAAGCTTTGGTATTACAAGAGTAGGGAAGAATCACACACCAAAGATCCTGTTTCTGTGATTCCTAGATCACAGAGGAGGGTTTTGATATCCAACCTTCAGCCTTGTACAGAATATACTTTCCGCATTGTATCATATACGGATTCAGGAGACCTGGGTCATTCTGAGGCTAAATGTTTCACGAAGAGCATCGAGATAATTCAAAACGTTCCTCCATCTGTTGCTATGGTACGAAAGAGAGAGAATTTTCAAATTGGGGCTTGTTCTTCTGGCTCGAAGATTGAGCCCAATCGCACTATGAAAGACTCTGGATTTAAGGTTCGAGACCTTGGAAAAATTTTGCATCTAGCTTGGGCTCAGGAACAAGGTTATCTTGAAGATATTTGCTGTGCTGATATGAAAACGTGCTGTGGACAAAGTGAAATGGTCAAGCCTAAAACTCCAGAAGAGCAGTTGCCTTCAGTTCCACGAGGCCTTGATTTAAATGTTGTTTCAGTTCCGGATTTAAATGAAGAACTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGATAATGGTTGCACTTTGATGCAGGCTGTTGAGGCAGATGATGATGCTGCCTCTCATGATCTTGAGAAGAATGGTTTAGCAAGATCCCATGGGAGTGGTGATTCCCAAACCTGGACCCATCGCCCAACAGGGGAAGTGCCAGCTGTCGACTCTCGCATAGATGTGACTAGAAAAAGGATAGCAAGCACGAATGAAGAGATACATGATTGTGACAGTACTTTGATAAATGGTTCTCCTGTACGCATATCTGATGGTTCATCTTCCCTGGATGAGAACTTCGAGTATTGCGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATAAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTCTGAGGTCAACAGACCAAGAACGCAGGGTGGTTAACACCTTCGTTCAAACTCTCATTGATGATCCAAGCAGTTTGGCAGGGCAACTTGTTGACTCTTTTTATGACATTATATCCAACAAGAGGCCAAGAACTGGATTCTGTAATAAAGCTTTGGCATCAAACTAA 2160 0.425 MDLEEKFVCKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFVKAGPKKELLPTCFAKDHKKVTAKGRMAETKSTGKTTKKQDSKKASNVGNPPFRKQNRKAENPMRIFPNPDQTSESGHSNSWICKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCLSESTQGDYCGLSCHIECALKHEKVGVVDHGQLMQLDGGYCCASCGKVTGILECWKKQLTIAKDARRVDALCHRIYLSYRLLDGTLKFRELHELVQKAKAKLETEVGPVNGVSAKMARGIVSRLPIAGDVQKFCTLAIEKADRWLASVPNVNPDSREGSLPAACKFVFEEVTASSVKIILLEVSNVAAENSKGYKLWYYKSREESHTKDPVSVIPRSQRRVLISNLQPCTEYTFRIVSYTDSGDLGHSEAKCFTKSIEIIQNVPPSVAMVRKRENFQIGACSSGSKIEPNRTMKDSGFKVRDLGKILHLAWAQEQGYLEDICCADMKTCCGQSEMVKPKTPEEQLPSVPRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLMQAVEADDDAASHDLEKNGLARSHGSGDSQTWTHRPTGEVPAVDSRIDVTRKRIASTNEEIHDCDSTLINGSPVRISDGSSSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTDQERRVVNTFVQTLIDDPSSLAGQLVDSFYDIISNKRPRTGFCNKALASN* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1788 719 Pfam Fibronectin type III domain 333 413 IPR003961 GO:0005515
Ahy3g1788 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Ahy3g1788 719 MobiDBLite consensus disorder prediction 63 86 - -
Ahy3g1788 719 PANTHER VIN3-LIKE PROTEIN 1 56 715 - -
Ahy3g1788 719 MobiDBLite consensus disorder prediction 12 28 - -
Ahy3g1788 719 Gene3D Immunoglobulins 314 417 IPR013783 -
Ahy3g1788 719 MobiDBLite consensus disorder prediction 12 40 - -
Ahy3g1788 719 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Ahy3g1788 719 CDD FN3 332 411 IPR003961 GO:0005515
Ahy3g1788 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 56 715 IPR044514 GO:0010048|GO:0040029
Ahy3g1788 719 MobiDBLite consensus disorder prediction 567 589 - -
Ahy3g1788 719 SUPERFAMILY Fibronectin type III 335 416 IPR036116 GO:0005515
Ahy3g1788 719 MobiDBLite consensus disorder prediction 63 122 - -
Ahy3g1788 719 CDD PHD_VIN3_plant 148 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1788 Ahy-Chr3 35544760 35550906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1788 124 710 PHD Gene Family AT3G24440 49.500 2.26e-180 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1788 - - gmx:100780157 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2077 13 38006507 38012567 Ahy3g1788 3 35544760 35550906 hybridization
Ahy3g1788 3 35544760 35550906 Ahy15g2847 15 146942556 146950742 PCT
Ahy3g1788 3 35544760 35550906 Ahy5g2425 5 98477965 98486151 PCT
Ahy15g2847 15 146942556 146950742 Ahy3g1788 3 35544760 35550906 PCT
Ahy5g2425 5 98477965 98486151 Ahy3g1788 3 35544760 35550906 PCT