Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1762 ATGCCTTCTCTGTCTATCTTCCCGTCACTGCCATCGCTTCAAAACCCTAACTTGGAGCATGCCCACCTCTTCAAATCCATCGGAACCCTAAATTTCAGTTTAACTTCACGAACAGAGTGTCAATGCCACTTCTCGCACCACTTCAAAGCCACTCTCTCTCTTCTCTCTAGGGTACAGAACCATAGAATCCCGTCCCGGAGGATACACTGCAAAGTCTTGAAGGATCCTGGGGAAGAGGTTAAGGTGGTTTTGGACTCCGACGGCGGAGGTGGCGGCGGCGGCGACGACGACGATGGCGATGGTGGGGATAAGAGAGAGGTTAAGAAGAAAGAAGGGTCTTCGGGGCCCTTGCCAGAATGGTTGAATTTCAATTCCGATGACGCAAAGACGGTGTTCGCGGCTCTGGCTATATCGCTTGCGTTTCGTGCGTTCGTGGCTGAGCCGAGGTACATTCCTTCGCTGTCAATGTATCCTACCTTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCATACTACTTTAGAAAGCCATGTGCAAATGACATAGTGATATTCAAAAGTCCTCCAGTCCTTCAAGAAGTTGGATATACTGATGATGATGTTTTCATAAAACGGATTATTGCAAAGGGAGGTGATATTGTGGAGGTTCGCAAAGGTCGTCTCATAGTTAACGGGGTTGAGAGGAGTGAAAAGTTCATCCTTGAACCACCTTCTTATGAGATGAAGCCCACGCGTGTTCCGGAAAACTACGTCTTTGTGATGGGGGACAACCGCAATAATAGCTATGATTCCCATGTGTGGGGTCCGTTGCCAGCCAAGAATATCATCGGAAGATCAGTGTTCCGATACTGGCCTCCAAATAGAATAGCCGGCACTGTTTCGGAGGATACATGTCCCGTTGAAACCAAGCAGGACACAACTACTCTAGTTTCTTCTCAATGA 945 0.4783 MPSLSIFPSLPSLQNPNLEHAHLFKSIGTLNFSLTSRTECQCHFSHHFKATLSLLSRVQNHRIPSRRIHCKVLKDPGEEVKVVLDSDGGGGGGGDDDDGDGGDKREVKKKEGSSGPLPEWLNFNSDDAKTVFAALAISLAFRAFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRIIAKGGDIVEVRKGRLIVNGVERSEKFILEPPSYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSEDTCPVETKQDTTTLVSSQ* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1762 314 ProSitePatterns Signal peptidases I serine active site. 153 160 IPR019756 GO:0004252|GO:0016021
Ahy3g1762 314 SUPERFAMILY LexA/Signal peptidase 142 291 IPR036286 -
Ahy3g1762 314 PANTHER SIGNAL PEPTIDASE I 105 296 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy3g1762 314 MobiDBLite consensus disorder prediction 83 114 - -
Ahy3g1762 314 ProSitePatterns Signal peptidases I lysine active site. 205 217 IPR019757 GO:0008236|GO:0016021
Ahy3g1762 314 CDD S26_SPase_I 147 279 IPR019533 GO:0004252|GO:0006465
Ahy3g1762 314 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 105 296 - -
Ahy3g1762 314 Pfam Signal peptidase, peptidase S26 128 285 IPR019533 GO:0004252|GO:0006465
Ahy3g1762 314 TIGRFAM sigpep_I_bact: signal peptidase I 129 287 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy3g1762 314 PRINTS Bacterial leader peptidase 1 (S26A) family signature 144 160 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy3g1762 314 PRINTS Bacterial leader peptidase 1 (S26A) family signature 247 266 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy3g1762 314 PRINTS Bacterial leader peptidase 1 (S26A) family signature 203 215 IPR000223 GO:0006508|GO:0008236|GO:0016020
Ahy3g1762 314 ProSitePatterns Signal peptidases I signature 3. 252 265 IPR019758 GO:0004252|GO:0016021
Ahy3g1762 314 Gene3D Umud Fragment, subunit A 141 299 - -
Ahy3g1762 314 MobiDBLite consensus disorder prediction 97 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1762 Ahy-Chr3 34687825 34690343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1762 156 286 MADS-box Gene Family AT1G29960 31.579 1.01e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1762 K03100 - gmx:100815810 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2049 13 37074741 37077324 Ahy3g1762 3 34687825 34690343 hybridization