Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1753 ATGACCACCACAACCACCACCACTTCCTCGTCTCATATTCTCCGCCACACCTCCGACTTCATTTCCGGCGTCCTTTCTCAATCGGAGCTCCGGCGACATCTCGCCGCGACCCTCCACCGCGAGACCACATCACTCTGCAGCCAAACAACCCTCAGACAGCTCAGCCTCGCCTCCGACACCATTGAAAACGCCATCTCCTCCTCCAGCACCTCCATCCGAACCTCTTCCCTCACCCTCGCCGAGAAGCTCCTCCTCCCTCTCTCCAAACTCCCCCTCTCCTCCTTCCTCCTCTCTCTCCTCCTATTCCTCTGGAACCGCCACGTGGATTCCGCCGTACTCCTCCTCCAAATCTTCCACTCCAATCCATCCCTGGTCAGATCCGAAATCGCTCCGGTTCTCTACGATCACCTCTTCTCCCTCCACCTGCTCCCTGTTTTCCGGTGGTTCGATGAGCACAGAACGCGGATTTTGTCCGAATCGAGCAGTGATGCGAGTGATTATTCAATTACGGAGGGGTCAGTGGTGCTGCCGTGCACCAAATTGTTGTCGAGGATGAGTGAGGATCAGGCTTCGAAGCTGAGGGAGTTGGAGAGAGAGTACCAGGAGGCTATCGACCAAAATTGCAGGGTTGTTGCTGTGTATTTCAAGGAGGTTTTGACCAGTAAAAGCAGTGAAGCGTCGATTAGTCCACCGCTGTTGACTCTGAAGAGCACGGAAGATGTTGACGGAGGGAAGAACAAAGAGGAGATTCAAGAATCCCAAATGTCTGTGTTGGAGAATGGACGGTATAATCCAATATGGTCCGAAAGGGAGACATCTATTGAATTCTTGAGCAGCACCTCCAGCAGCAAATCTTCACATATAAATTATTATCCTCAAAGAGTCTCTCCCAGAATCCTCAAACGCCAAAAATCTTCGAAAGATTCAGCACCAGTCTATATGAAATCAACAAGTGAAAATAGACCTTCTTTGGATGGGAATCTGTCTTCTTCTTCGGATTCCGAAGCAGAAAGTGAGGATGACGACAAAAATGTGGCATTGTTGGAGCCTCGACAAAGCCAGTCCCATGAACAAATGCAACCTAACTTGAAAGAATTCAGAGGCTCCCCAGAGTATCATATGGCAGAGTATGATAATCCGCCGCCTGGAACTGCAAAAAATATGCCTCCTAAGGACTTTGTCTGTCCGATAACTAGTAACATATTTGATGATCCTGTGACTCTTGAGACAGGACAAACATACGAACGTAAAGCTATCGAGGAATGGTTCAAAACTGGCAACTCAACTTGTCCAATCACTCGCCAGAAGCTGCAAAACACGCAGTTACCTAAGACAAACTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGAACACAACCCTAATTCAGTTCCACCGCCATGTGAGAGTCCATATGAAGAAAGCAAGGCAGTAACGAAGACAATAAAGGTTTCAACTCTGCCTAAAGATGTCGTAAAACAAGCCACGGTGGATGGGATCATTAGTGAGTTGCGCCATGCAATCAATAATCTCTATATGTCAGATATTCTTGAAGAATCTGAAATGGCTGTGCTTCATATTGAGAAGCTTTGGAGAGAAGTGAATTTAGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTATGGAGATCCTTTTCAATTCTGTTCAGCCCCGGGTGCTACGAGCAGCAGTGTTCCTTCTGGCCGAAACCGGTTCTAGAGACCACTCTGTTATTCAGACGCTTACGCGTGTGGACACTGACGTAGAATGTATCATGGCACTTTTCAAGAAAGGGTTGACAGAAGCTGTTGTGCTGCTGTATCTGCTAAAACCTTCCACTACAAGTCTTGCTGAGATGGCCACACCAGAATCTCTCCTAGCAGCATTCAATAAGGAAGAGGAAAACTTGGTTCCAATGTGTCTGAAGCCCAAAACAGCTGCCTTGCTTTTATTCGCACAGGTTATTGGAAGTAGTGAAGAAAGAATTGCGTTGTCAGCTGCCAAGTGTGTTTTCTCTGAAAAAGCAATCGGAAATATTGTCGCCAGTTTAGAAGCTGAGTGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGCCGGAACACCATTGCTGAAAAGGCAGACTTGTCTCCTATTTTGGAAAGTTTCACTGGTGCAACTGATGTAGAGTGTTTAAAAATTGTCCAATTTTTCTCTGAATTAATAAAGTTAAATAGGAGGACATTGAATGAACAAATCCTCCGCTTTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACACTGCTCATTTGTCTGCAGACAGGCCTTCAAGACCAATGTCCTGTCATGGCCGGCCTTTTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCAATAGATACTCTCATTTCATGCCTGAGAAACACAGATTTCCCTGCTGCTCAATTAGCAGCTGCTCATACAATCATGTCACTTCAAGGGAGGTTTGACTTCTCTGGAAAGTCTCTTACCAGAGAAGTCCTTCTTAAACGTGCAGGTGTTGACAGAAGTCCTGGATATCTTGAACAGGTGCTCCAGATCAACAGCTTCTACCCAGAAACTGAAATAACTCCTGAAGAAGAGAAAGCAGCGGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTCAGCCACGAGTTTGGTATAGTTTTCGAGGCTTTAGCAGATGGCATAAATAGCCGAAATCCAGAACTACGGTCAGCATGCTTTATATCAGCTACGTGGCTCGTATACATGTTGACCATTCTACCGGACACAGGGGTACAAGGAGCAGCGCGTGTCTGCTTGCTGAAACAGTTCATAACAAAACTAAATTCTGCTAAGGACATTCATGATAGAGTCCTTTCTATGATTGCTCTAAATAGTTTTCTCCATTTCCCTGATGGCTTTCACGATCTAACTTCCTACACTAAGGATATCTTAAAAGGTTTGAGAGAGCTTAAGAGAATCTCTCCATTGACATCTGAAATTCTTAAAGTTCTGGTTGAAGAGAATGAATCTAAAAGTGACATATGGATACATAAAGAGCTGATTCGAGTAGATTGCAGTGAGAATGGGGAAGTGCTGTCTCTCATTTTTTTCAGGAATAAATTATTTTCGGGCCACTCTGATGGAACTATTAAGGTTTGGATGGTAAAGGATACTTCATTCCATCTCTTGCAAGAGATCCAAGAACATCTTAAGCCTGTAACAAGTTTGGTGATTTCAGAATCTGGTGACAGACTATACAGCGGTTCACTTGATCGAACTGCAAAGGTTTGGTCTGTTGGAAAGGCAGCAATACATTGTGTACAGGTTCATGATATGAAGGAGCAGATTCATAATTTAATTGTAACTGACAGCATATCTTGTTTCACTGCACAGGGCGCTGGTGTCAAGGTTCAATCATGGAATGGAGAATCAAAAGTGTTAAATTCTAATAAATACGTTAAGTGCTTGGCTCATGTTCATGGGCGATTATACTGCGGCTGCCACGATAGCAGTGTTCAGGAGATAAATCTGGACACCGGAAACGTCAGTACTATTCAAAGTGGTTCTAAAAAACTACTTGGCAAAGCCTATCCTATTCATGCACTGCAACTTCATGGTGAACTTATATATGCAGCTGGGTCTTCCTTAGATGGATCTGTTATAAAGATGTGGGACAATTCTAGTTATAGATTGGTGGGATCTCTGCAAACCGGATTGGAAGTGCGGGCTATGGCTGTGAGCTCAGAATTAATTTACTTGGGGGGCAAGGGAGTAGCTGTGGAAATCTGGGATAAGACGAAACACAACAAACTTGACACATTACAAACGGCCACAAACAGTAGGGTTCTTTGCATGTCTCTAGACAGGAATGAAGAAATTTTGGTAATTGGAACTTCTGATGGCCAAATTCAGGCATGGAGAGTAAATTAA 3990 0.4436 MTTTTTTTSSSHILRHTSDFISGVLSQSELRRHLAATLHRETTSLCSQTTLRQLSLASDTIENAISSSSTSIRTSSLTLAEKLLLPLSKLPLSSFLLSLLLFLWNRHVDSAVLLLQIFHSNPSLVRSEIAPVLYDHLFSLHLLPVFRWFDEHRTRILSESSSDASDYSITEGSVVLPCTKLLSRMSEDQASKLRELEREYQEAIDQNCRVVAVYFKEVLTSKSSEASISPPLLTLKSTEDVDGGKNKEEIQESQMSVLENGRYNPIWSERETSIEFLSSTSSSKSSHINYYPQRVSPRILKRQKSSKDSAPVYMKSTSENRPSLDGNLSSSSDSEAESEDDDKNVALLEPRQSQSHEQMQPNLKEFRGSPEYHMAEYDNPPPGTAKNMPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFKTGNSTCPITRQKLQNTQLPKTNYVLKRLIASWKEHNPNSVPPPCESPYEESKAVTKTIKVSTLPKDVVKQATVDGIISELRHAINNLYMSDILEESEMAVLHIEKLWREVNLGVDIHSMLSKPPIINGFMEILFNSVQPRVLRAAVFLLAETGSRDHSVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLKPSTTSLAEMATPESLLAAFNKEEENLVPMCLKPKTAALLLFAQVIGSSEERIALSAAKCVFSEKAIGNIVASLEAEWAEERIAAVEILLRCMQEDGTCRNTIAEKADLSPILESFTGATDVECLKIVQFFSELIKLNRRTLNEQILRFIKEEGPFSTMHTLLICLQTGLQDQCPVMAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTDFPAAQLAAAHTIMSLQGRFDFSGKSLTREVLLKRAGVDRSPGYLEQVLQINSFYPETEITPEEEKAADDWERKIASVLVSHEFGIVFEALADGINSRNPELRSACFISATWLVYMLTILPDTGVQGAARVCLLKQFITKLNSAKDIHDRVLSMIALNSFLHFPDGFHDLTSYTKDILKGLRELKRISPLTSEILKVLVEENESKSDIWIHKELIRVDCSENGEVLSLIFFRNKLFSGHSDGTIKVWMVKDTSFHLLQEIQEHLKPVTSLVISESGDRLYSGSLDRTAKVWSVGKAAIHCVQVHDMKEQIHNLIVTDSISCFTAQGAGVKVQSWNGESKVLNSNKYVKCLAHVHGRLYCGCHDSSVQEINLDTGNVSTIQSGSKKLLGKAYPIHALQLHGELIYAAGSSLDGSVIKMWDNSSYRLVGSLQTGLEVRAMAVSSELIYLGGKGVAVEIWDKTKHNKLDTLQTATNSRVLCMSLDRNEEILVIGTSDGQIQAWRVN* 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1753 1329 MobiDBLite consensus disorder prediction 283 342 - -
Ahy3g1753 1329 ProSiteProfiles Trp-Asp (WD) repeats profile. 1086 1119 IPR001680 GO:0005515
Ahy3g1753 1329 SUPERFAMILY ARM repeat 26 1033 IPR016024 -
Ahy3g1753 1329 SMART WD40_4 1287 1327 IPR001680 GO:0005515
Ahy3g1753 1329 SMART WD40_4 1199 1245 IPR001680 GO:0005515
Ahy3g1753 1329 SMART WD40_4 1037 1074 IPR001680 GO:0005515
Ahy3g1753 1329 SMART WD40_4 1079 1118 IPR001680 GO:0005515
Ahy3g1753 1329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1086 1119 - -
Ahy3g1753 1329 Coils Coil 186 206 - -
Ahy3g1753 1329 Pfam WD domain, G-beta repeat 1083 1118 IPR001680 GO:0005515
Ahy3g1753 1329 SMART Ubox_2 392 456 IPR003613 GO:0004842|GO:0016567
Ahy3g1753 1329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 465 IPR013083 -
Ahy3g1753 1329 SUPERFAMILY WD40 repeat-like 1046 1328 IPR036322 GO:0005515
Ahy3g1753 1329 CDD RING-Ubox_PUB 393 435 IPR045210 -
Ahy3g1753 1329 Pfam U-box domain 390 460 IPR003613 GO:0004842|GO:0016567
Ahy3g1753 1329 Gene3D - 1144 1329 IPR015943 GO:0005515
Ahy3g1753 1329 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1295 1329 - -
Ahy3g1753 1329 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1328 - -
Ahy3g1753 1329 SUPERFAMILY RING/U-box 389 465 - -
Ahy3g1753 1329 Gene3D - 1015 1143 IPR015943 GO:0005515
Ahy3g1753 1329 ProSiteProfiles Trp-Asp (WD) repeats profile. 1295 1329 IPR001680 GO:0005515
Ahy3g1753 1329 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1328 - -
Ahy3g1753 1329 ProSiteProfiles U-box domain profile. 388 463 IPR003613 GO:0004842|GO:0016567
Ahy3g1753 1329 MobiDBLite consensus disorder prediction 309 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1753 Ahy-Chr3 34527219 34533643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1753 390 467 U-box Gene Family AT3G46510 51.282 1.82e-17 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1753 - - gmx:100808867 1796.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2038 13 36828194 36835664 Ahy3g1753 3 34527219 34533643 hybridization