Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1748 ATGTCTGCAGAAAAGGGGTATGTAGGGTTGGGAGAGGTTGGTGAAATGGAAGAAAGCATTGGGTTGAACCTGAAAGCAACTGAGTTGAGGCTTGGGTTGCCAGGGTCAGAGTCACCGGTGAAGAGTACTAGTTTGGGGGCAAAGAGGGGTTTCTCGGACGCCATTGATGGCAAGTGGGTTCTTTCTGGGAATGGAAAAGCTGGATCTGACTTGGCTTTGGGCAAAGATGCTTCCTTGTTCTCTCCTCCCTCTGACAATACCAACAATGACCCTCTTCCACTTCCACAACCTTCAAAGCCTATTCCTGCTCCTGCTGCAAAGGCACAAGTTGTTGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCAACTCAGCCTCCTCAAAAGAATGAAGCTGATGCAGAACCCAAGCCTGGTTGCCTTTATGTCAAAGTCAGCATGGATGGCGCCCCATACTTGAGGAAAATGGATCTCAACAATTATGCTTCCTATAGGGACCTCTCTTCAGCACTCGAAAAGATGTTTAGTTGTTTTACTCTCGGTCAATGCGGCTCTCATGGGGTTTCTAGCCGAGATAATTCAAGCGAAAGCAAATTGAGGGATCTCCTCCACGGCTCGGAATACGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCTTGGGAGATGTTCACTGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCCGAAGCAATTGGGTTAGCACCTAGAGCCATGGAAAAGTGCAGAAGTCGCAATTAG 789 0.4791 MSAEKGYVGLGEVGEMEESIGLNLKATELRLGLPGSESPVKSTSLGAKRGFSDAIDGKWVLSGNGKAGSDLALGKDASLFSPPSDNTNNDPLPLPQPSKPIPAPAAKAQVVGWPPIRSFRKNSMATQPPQKNEADAEPKPGCLYVKVSMDGAPYLRKMDLNNYASYRDLSSALEKMFSCFTLGQCGSHGVSSRDNSSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCRSRN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1748 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 100 255 IPR003311 GO:0005634|GO:0006355
Ahy3g1748 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 87 IPR003311 GO:0005634|GO:0006355
Ahy3g1748 262 SUPERFAMILY CAD & PB1 domains 138 243 - -
Ahy3g1748 262 Pfam AUX/IAA family 42 253 IPR033389 -
Ahy3g1748 262 Gene3D - 137 255 - -
Ahy3g1748 262 ProSiteProfiles PB1 domain profile. 142 244 IPR000270 GO:0005515
Ahy3g1748 262 PANTHER AUXIN-INDUCED PROTEIN 100 255 - -
Ahy3g1748 262 PANTHER AUXIN-INDUCED PROTEIN 12 87 - -
Ahy3g1748 262 MobiDBLite consensus disorder prediction 76 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1748 Ahy-Chr3 34350830 34353095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1748 85 247 B3 DNA Binding Superfamily AT3G61830 29.878 2.53e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Ahy3g1748 AUX_IAA 2.20E-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1748 K14484 - gmx:100803754 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2029 13 36395083 36397275 Ahy3g1748 3 34350830 34353095 hybridization
Ahy3g1748 3 34350830 34353095 Ahy15g2913 15 148884249 148889318 PCT
Ahy3g1748 3 34350830 34353095 Ahy5g2357 5 96912203 96917180 PCT
Ahy15g2913 15 148884249 148889318 Ahy3g1748 3 34350830 34353095 PCT
Ahy5g2357 5 96912203 96917180 Ahy3g1748 3 34350830 34353095 PCT