Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1727 ATGGGTGAGGACCTACCAAGCCCAAACTCTTGTTATTCTTCTTCTTCGTCAGTTAGTCTGGATCCGGAAAAGCAGAAAAGTGCGGGGAAGAGAGGGAGGGAGAGGAGTAATAACAAGAATAATAATAAGCACCCGGTGTACAGAGGGGTGAGAATGAGAGCGTGGGGCAAGTGGGTCTCTGAAATCAGAGAGCCTCGTAAGAAGAATCGCATCTGGCTCGGCACCTTCGCCACCCCCGACATGGCCGCCCGCGCCCACGACGTCGCCGCCCTCGCCATCAAAGGCTCCTCCGCCATTCTCAACTTCCCACAGCTAGCCCCCCAACTTCCCCGCCCCCACTCTAACTGTCCCCGTGACGTCCAGGCCGCCGCCGCCAAGGCCGCCTCCATGGACTTTCTCTCTCCCTCATCATCATCATCATCATCGTCGTCGTCGTCACCATCATCATCAATATCGTCGTCCGAGGAGCCATCGACGCCGGAGGAGCTGGGGGAGATAGTGGAGCTGCCAGCACTAGGAACGAGTTTCGAATCGGCGGAGGCGAACAAGGAAATGGTGTTCTTGGAGCCAGTTGATGGGTGGCTGTATCCTCACCCATGGTGGTATCACAGCAGCAGCATTTATGAGGAGGAAGTGAGGGAAGATTGCGGTGTCTATTTTACCGGGGATCAGATTTCAATGCACACTCAGTCTAAGTCTCACCAGTACACCACTCTTGACCTTGATCCTCCTTCCTTGTGGCAATACTAA 750 0.5493 MGEDLPSPNSCYSSSSSVSLDPEKQKSAGKRGRERSNNKNNNKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPDMAARAHDVAALAIKGSSAILNFPQLAPQLPRPHSNCPRDVQAAAAKAASMDFLSPSSSSSSSSSSSPSSSISSSEEPSTPEELGEIVELPALGTSFESAEANKEMVFLEPVDGWLYPHPWWYHSSSIYEEEVREDCGVYFTGDQISMHTQSKSHQYTTLDLDPPSLWQY* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1727 249 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Ahy3g1727 249 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Ahy3g1727 249 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Ahy3g1727 249 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Ahy3g1727 249 MobiDBLite consensus disorder prediction 1 48 - -
Ahy3g1727 249 MobiDBLite consensus disorder prediction 134 159 - -
Ahy3g1727 249 MobiDBLite consensus disorder prediction 7 23 - -
Ahy3g1727 249 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Ahy3g1727 249 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Ahy3g1727 249 MobiDBLite consensus disorder prediction 134 162 - -
Ahy3g1727 249 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Ahy3g1727 249 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Ahy3g1727 249 MobiDBLite consensus disorder prediction 24 41 - -
Ahy3g1727 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 225 - -
Ahy3g1727 249 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1727 Ahy-Chr3 33771760 33773113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1727 5 217 AP2-EREBP Transcription Factor Family AT5G11590 54.751 2.67e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy3g1727 AP2 3.80E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1727 K09286 - csv:101219745 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g2009 13 35944340 35945758 Ahy3g1727 3 33771760 33773113 hybridization
Ahy3g1727 3 33771760 33773113 Ahy15g2932 15 149326243 149327383 PCT
Ahy3g1727 3 33771760 33773113 Ahy5g2340 5 96533480 96534983 PCT
Ahy15g2932 15 149326243 149327383 Ahy3g1727 3 33771760 33773113 PCT
Ahy5g2340 5 96533480 96534983 Ahy3g1727 3 33771760 33773113 PCT