Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1708 ATGGCGGGCACAGATACAGGGTTGAGTAATATGATGGATAACGTTAGCGTTATAGATTTGGGAGGCTTCGATCTGGACGAGGCTCTGGCTACAGTGGCCGGAGAATCGCAGGTGGTAATTGCGGCGGCTTCGAAGAGCTTCGTGTCAAAGTTGCCGGTGGCAGAGGCGGAAGAGGTGGAGGAAAAGGATGTGTGCTCGGTATGCATGGAAGGGTTTGAGGGCGGAGGAAACAAGCGAGTCCCATGCGGCCACGTGTACCACTCAGAATGCATCATTCTGTGGCTGTCCCGCTCCAACTCCTCTTGCCCTCTTTGCCGCCGCCATATCTTCCTCAGCTAA 339 0.5487 MAGTDTGLSNMMDNVSVIDLGGFDLDEALATVAGESQVVIAAASKSFVSKLPVAEAEEVEEKDVCSVCMEGFEGGGNKRVPCGHVYHSECIILWLSRSNSSCPLCRRHIFLS* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1708 112 SMART ring_2 65 105 IPR001841 -
Ahy3g1708 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 22 109 - -
Ahy3g1708 112 Pfam Ring finger domain 64 106 IPR001841 -
Ahy3g1708 112 ProSiteProfiles Zinc finger RING-type profile. 65 106 IPR001841 -
Ahy3g1708 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 110 IPR013083 -
Ahy3g1708 112 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 22 109 - -
Ahy3g1708 112 SMART ringv_2 64 106 IPR011016 GO:0008270
Ahy3g1708 112 SUPERFAMILY RING/U-box 57 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1708 Ahy-Chr3 33149803 33150367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1708 23 106 C3H Transcription Factor Family AT1G68180 35.632 9.39e-12 57.8