Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1686 ATGTTGCCAAACAAGGCCTGCCTTCTCGCTTTCCTCCTCCTCCTCCGGAGTACCATCCATTTAACCGCAGCCATTGGTGTCTCTGTTGGGGTTGGTGGTGGTTTTGGAGTAGGCGTGGGCATTGGCAATGGCAATGGCAATGTTGGCAATGGCAACACCCCTTCAGAGCCTCCCTCTTCAAAGTTGGAGAGTGCCTACAAAGCTCTGCAGGCATGGAAATCAGCCATCTCCGATGACCCTCTCAAGCTTCTAGATTCATGGGTTGGTCCTAATGTCTGCTCCTACAAAGGAGTGTTCTGTTCACCCCCTCAAGACGATGAAATCTCTTCTCTTTCAACATCTACTGCCACCGCCAACGTTGTAGTTGCAGGAATCGACCTCAACCATGCAAATCTCCAAGGAACTCTCGTCAAAGAACTCTCTTTACTGGTTGACATGTCTCTTCTTCACCTCAATAGTAACAGGTTCAGTGGCACAGTTCCCGACACATTCAAAGACCTCGTTTCTCTGGAAGAACTGGACCTCAGCAACAACCACCTCTCTGGTCCATTCCCCATTGTTACTCTCTACATGCCAAGCCTCCTTTACTTGGACCTCAGATTCAACTCATTCTCAGGTCAACTCCCTGATGAACTCTTCAACAGGAAGCTGGATGCCATATTCCTCAACAACAACCAATTCCAAGGTGAGATCCCTCAGAGCTTGGGAAATTCACCAGCATCGGTGATCAATCTGGCTAACAACAAGCTCAGTGGGAACATTCCAACAAGTTTTGGGCTCATGGGGAATAAGCTCAAAGAGGTTCTGTTCCTCAACAACCAGCTAACAGGTTGCATTCCTGAAGGGGTGGGTCTGTTTGATGAACTTGAAGTGTTTGATGTGAGCTTCAATTCACTCATGGGGCACTTGCCAGACACAATATCATGCTTGCAAGACATTGAGGTTCTCAATCTGGGACACAACAAGCTCTCAGGAGAGTTATCTGATGTGATCTGCTCCTTGACAAGTTTGGTGAACCTCACCGTTGCTTACAACTTCTTCTCTGGTTTGAGCCAGCAATGCAGCAGGCTTTTCAACATTGGCTTTGATTTCTCAGGAAACTGCATTCCTGGTAGAGACATGCAGAGACCTCAACCAGAGTGTTCTGTTATTCCAGGTGGCACGCTCAATTGCCTTAGAATCCCTACTCCAAGGCCTCTTGTTTGTGCTTCTTTGCCTCGAATCATCTTCTCCAATAATATGCAATCATCCTCACACCATACTTCTTCTTCTTCATATCCTTGA 1284 0.4727 MLPNKACLLAFLLLLRSTIHLTAAIGVSVGVGGGFGVGVGIGNGNGNVGNGNTPSEPPSSKLESAYKALQAWKSAISDDPLKLLDSWVGPNVCSYKGVFCSPPQDDEISSLSTSTATANVVVAGIDLNHANLQGTLVKELSLLVDMSLLHLNSNRFSGTVPDTFKDLVSLEELDLSNNHLSGPFPIVTLYMPSLLYLDLRFNSFSGQLPDELFNRKLDAIFLNNNQFQGEIPQSLGNSPASVINLANNKLSGNIPTSFGLMGNKLKEVLFLNNQLTGCIPEGVGLFDELEVFDVSFNSLMGHLPDTISCLQDIEVLNLGHNKLSGELSDVICSLTSLVNLTVAYNFFSGLSQQCSRLFNIGFDFSGNCIPGRDMQRPQPECSVIPGGTLNCLRIPTPRPLVCASLPRIIFSNNMQSSSHHTSSSSYP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1686 427 PANTHER LRR/EXTENSIN 5 418 - -
Ahy3g1686 427 Pfam Leucine rich repeat 149 203 IPR001611 GO:0005515
Ahy3g1686 427 ProSiteProfiles Leucine-rich repeat profile. 169 190 IPR001611 GO:0005515
Ahy3g1686 427 Gene3D Ribonuclease Inhibitor 238 360 IPR032675 -
Ahy3g1686 427 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 5 418 - -
Ahy3g1686 427 SUPERFAMILY L domain-like 65 359 - -
Ahy3g1686 427 Gene3D Ribonuclease Inhibitor 63 237 IPR032675 -
Ahy3g1686 427 Pfam Leucine rich repeat N-terminal domain 64 101 IPR013210 -
Ahy3g1686 427 PRINTS Leucine-rich repeat signature 310 323 - -
Ahy3g1686 427 PRINTS Leucine-rich repeat signature 170 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1686 Ahy-Chr3 32566103 32568000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1686 61 384 Leucine-rich Repeat extension Gene Families AT3G24480 50.926 1.16e-104 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1686 - - gmx:100820611 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy13g1957 13 34407718 34409594 Ahy3g1686 3 32566103 32568000 hybridization