Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1659 ATGTCTTATGAGGGATTGAATGCATTGGGCCAGCAGATTGGCCATGTAAGCACTGGTTTATCAGAGAAAATAATAACCAATCAAATGATGACAAAAACATATTTAATGGCTGCTAGTGCTGTTAATTTGGAGGAGGCAACTTCTCATGAGGTGGAAGCTGATGTTTGTATAATATGCCAGGATGAATACAAGAACCAAGATATGATTGGAGTTCTTCAATGTGAGCATGAATATCATGCTGATTGTTTAAGGAAATGGTTGGTTGTGAGGAATGTCTGCCCCTTGTGCAAATCAGAAGCATTCATTCTAGGGGTGTAA 318 0.3899 MSYEGLNALGQQIGHVSTGLSEKIITNQMMTKTYLMAASAVNLEEATSHEVEADVCIICQDEYKNQDMIGVLQCEHEYHADCLRKWLVVRNVCPLCKSEAFILGV* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1659 105 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 102 - -
Ahy3g1659 105 SMART ring_2 56 96 IPR001841 -
Ahy3g1659 105 SUPERFAMILY RING/U-box 55 101 - -
Ahy3g1659 105 Pfam Ring finger domain 55 97 IPR001841 -
Ahy3g1659 105 ProSiteProfiles Zinc finger RING-type profile. 56 97 IPR001841 -
Ahy3g1659 105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 101 IPR013083 -
Ahy3g1659 105 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 102 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1659 Ahy-Chr3 31439637 31441460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1659 1 101 C3H Transcription Factor Family AT2G15530 44.118 8.00e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1659 K19041 - ahf:112790141 217.624