Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1639 ATGCCATATATGTTGTTCAACATCGATGGTCATCAAGTTCCACAACAGACAGTTATTGAAGTTGGAGATACTTTTAAGAGAATACTAGAAGAGTTAAAGACATTCAAAATATCTAGGGAAGGTTATGTTCTGCTTCAGTTTGCACCCGCAAGTGCTTCGTGGCAGTATAATTGGACTAGAAAGCAGGTGTTCTCATTATCAGTGGGTGAAATGGGAACTGTGATTAGCCTTGGTAAAAGGGAGTCTTGTGAATTCTTCCATGATCGTATGAAGAGCAAAAGGTGA 285 0.393 MPYMLFNIDGHQVPQQTVIEVGDTFKRILEELKTFKISREGYVLLQFAPASASWQYNWTRKQVFSLSVGEMGTVISLGKRESCEFFHDRMKSKR* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1639 94 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 34 93 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ahy3g1639 94 Pfam Whirly transcription factor 32 93 IPR013742 GO:0003697|GO:0006355|GO:0006952
Ahy3g1639 94 Gene3D Transcriptional Coactivator Pc4; Chain A 21 94 IPR009044 GO:0003677|GO:0006355
Ahy3g1639 94 SUPERFAMILY ssDNA-binding transcriptional regulator domain 31 91 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1639 Ahy-Chr3 30921038 30929277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1639 31 93 Whirly Transcription Factor Family AT2G02740 63.492 1.26e-24 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Ahy3g1639 Whirly 3.00E-22 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1639 - - adu:107478549 192.971