Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1626 ATGAAAATGGCGCCTCTTATTATGATTTCATCATGTTTCGTTTGGAATCTCTGTATGGTTCTTATCGGAGTAAGTGTTAGTGTCCCTGTTGAAGCTAAATCTTGGCTTAAAGCTCATGCAACTTTCTATGGGGCCAATCAAAGTCCCATCAGCCTCGGGGGAGCTTGTGGTTATGACAACACCTTTCATGCTGGGTTTGGTGTCAACACTGCGGCGGTGAGCACCATGCTCTTCAGAGGTGGTGAGGCTTGTGGAGCATGCTACCAAGTGATTTGCGACTACCGGGTCGACCCAAAATGGTGCCTCCGGCGACGAAGTGTGACCGTAACTGCCACCAATTTTTGCCCTCCGAACAACCAGGGAGGGTGGTGTGATCCACCTCACCATCACTTTGATATGTCCGCTCCGTCTTTCTTTCGCATTGCAAGACAAGGCAGTGAAGGCATTGTTCCCGTTCTCTATACAAGGGTGCCATGCAAAAGAAGAGGTGGAGTGAGATTCACGTTGAGGGGGCAATCCAATTTCAACATGGTGATGATATCCAACGTGGGAGGCAGCGGGGACGTGAAGGCCGTCTCGATCAAAGGATCGAGAGGTCGCTCGTCTTGGCTGCCCATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGTGGATCTCCGGAACCAGAGGCTCTCATTCAAGCTTACATTGGCAGATGGGAAGACACTGCTGTTCCTCAATGTTGTTCCTTCTAGTTGGAGGTTTGGACAGACGTTTTCATCAAGAAACCAGTTCTCTTGA 783 0.5032 MKMAPLIMISSCFVWNLCMVLIGVSVSVPVEAKSWLKAHATFYGANQSPISLGGACGYDNTFHAGFGVNTAAVSTMLFRGGEACGACYQVICDYRVDPKWCLRRRSVTVTATNFCPPNNQGGWCDPPHHHFDMSAPSFFRIARQGSEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVSIKGSRGRSSWLPMHRNWGANWQSSVDLRNQRLSFKLTLADGKTLLFLNVVPSSWRFGQTFSSRNQFS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1626 260 SUPERFAMILY PHL pollen allergen 161 255 IPR036749 -
Ahy3g1626 260 Gene3D - 23 160 IPR036908 -
Ahy3g1626 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 164 IPR007112 -
Ahy3g1626 260 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Ahy3g1626 260 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Ahy3g1626 260 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Ahy3g1626 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Ahy3g1626 260 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Ahy3g1626 260 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Ahy3g1626 260 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Ahy3g1626 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Ahy3g1626 260 SMART dpbb_1 70 154 IPR007112 -
Ahy3g1626 260 Pfam Lytic transglycolase 70 154 IPR009009 -
Ahy3g1626 260 SUPERFAMILY Barwin-like endoglucanases 34 182 IPR036908 -
Ahy3g1626 260 Pfam Expansin C-terminal domain 165 244 IPR007117 -
Ahy3g1626 260 PANTHER EXPANSIN-A12 9 260 - -
Ahy3g1626 260 PANTHER EXPANSIN-A15 9 260 IPR002963 GO:0009664
Ahy3g1626 260 Gene3D - 164 260 IPR036749 -
Ahy3g1626 260 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Ahy3g1626 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Ahy3g1626 260 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Ahy3g1626 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Ahy3g1626 260 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Ahy3g1626 260 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Ahy3g1626 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 255 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1626 Ahy-Chr3 30422439 30426029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1626 17 258 Expansin Gene Family AT3G15370 61.029 6.23e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1626 - - ahf:112735861 540.421