Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1597 ATGTTGGGAGGGCTTTTTGAGCGAGTGAGTGAGTGGATTCCATCCATGGCTGCAGTTGCTGAGGTTCCCACTGACATTGCAGCTCCAAATCGATTGGACTCAAAGCCAAAACCAAAGGCAGAATCTGATGAGTTCAATGTGCAAACGCTTGTTGACATCTTCAAAAAACTGAACCCTTTGGCCAAGGAGTTCTTCCCTTCATCTTATTCTCACCAGGGTCACTATCACTCCTCACCCAACCCGTCTCTCCCCAATAATTTTGATGCTGATAGTAACAAAAGGAACCGAAGGAGGCGAGCAAATTTTAACCAGGGAGGTAGAAGGTTGAATGGAAGAGTGAAGGCTCAGAGAGAGGATAGTGTTAAAAGAACAGTATATGTTTCTGATATTGATCAGCAGGTTACTGAGGAGCGCCTTGCTGCCATATTCAGCACTTGCGGGCAGGTAATTGACTGCCGAATTTGTGGTGATCCTCATTCAGTTCTTCGTTTTGCATTTGTGGAATTCACAGATGAAGAAGGTGCAAGGGCAGCTTTAAGACTTGGTGGAACTGTGCTTGGATATTATCCTCTCAAGGTCCTTCCATCAAAAACTGCTATCCTTCCAGTGAATCCTACATTTCTTCCAAGGTCAGCTGATGAGCGGGAAATGTGTACCCGAACCGTCTACTGTACAAATATTGATAAAAAGGTTTCTCAAACTGAAGTCAAGAGTTTTTTTGAATCATCTTGTGGTGAGGTCACTCGGCTGAGGCTGTTAGGAGATCGCGCGCATTCAACTCGTATTGCTTTTGTTGAATTTGCAATGGCTGAAAGTGCCATCGTAGCATTAAGTTGTAGCGGGATGCCCTTGGGAACCCAACCTGTCAGGGTAAGTCCTTCTAAAACGCCCGTGAGGACAAGGGTTGCTCGTCCAGCACCTCAGTAA 927 0.4563 MLGGLFERVSEWIPSMAAVAEVPTDIAAPNRLDSKPKPKAESDEFNVQTLVDIFKKLNPLAKEFFPSSYSHQGHYHSSPNPSLPNNFDADSNKRNRRRRANFNQGGRRLNGRVKAQREDSVKRTVYVSDIDQQVTEERLAAIFSTCGQVIDCRICGDPHSVLRFAFVEFTDEEGARAALRLGGTVLGYYPLKVLPSKTAILPVNPTFLPRSADEREMCTRTVYCTNIDKKVSQTEVKSFFESSCGEVTRLRLLGDRAHSTRIAFVEFAMAESAIVALSCSGMPLGTQPVRVSPSKTPVRTRVARPAPQ* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1597 308 MobiDBLite consensus disorder prediction 71 89 - -
Ahy3g1597 308 MobiDBLite consensus disorder prediction 288 308 - -
Ahy3g1597 308 Pfam Ataxin-2 C-terminal region 53 68 IPR009818 -
Ahy3g1597 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 287 IPR000504 GO:0003723
Ahy3g1597 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 188 IPR000504 GO:0003723
Ahy3g1597 308 MobiDBLite consensus disorder prediction 71 92 - -
Ahy3g1597 308 SUPERFAMILY RNA-binding domain, RBD 85 196 IPR035979 GO:0003676
Ahy3g1597 308 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 16 306 - -
Ahy3g1597 308 Gene3D - 208 302 IPR012677 -
Ahy3g1597 308 Gene3D - 76 199 IPR012677 -
Ahy3g1597 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 198 IPR000504 GO:0003723
Ahy3g1597 308 SUPERFAMILY RNA-binding domain, RBD 211 301 IPR035979 GO:0003676
Ahy3g1597 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 296 IPR000504 GO:0003723
Ahy3g1597 308 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 16 306 - -
Ahy3g1597 308 CDD RRM1_CID8_like 121 200 IPR034823 -
Ahy3g1597 308 SMART rrm1_1 124 194 IPR000504 GO:0003723
Ahy3g1597 308 SMART rrm1_1 221 292 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1597 Ahy-Chr3 29601191 29606237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1597 120 277 Eukaryotic Initiation Factors Gene Family AT1G34140 24.845 4.05e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1597 - - jre:108994422 426.402