Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1561 ATGGGAGAAACACAGCATCACCGTCCAACATCGTCAAGACTTGGGATGAGGGCCGTGGCCGGAGGAGGAGGAGGGGGAGAAATTGTGGAGGTCCAAGGAGGCCACATTGTGCGGTCCACCGGCCGGAAGGACCGACACAGCAAGGTCTGCACAGCCAAGGGCCCGAGGGACCGCCGTGTGCGACTCTCCGCACACACCGCCATCCAGTTCTACGACGTTCAGGACCGACTCGGCTACGACCGCCCAAGCAAGGCCGTCGACTGGCTCATCAAGAAAGCAAAGGCCGCCATCGACGAGCTCGCCGAGCTCCCCGCATGGAAACCAACTGCCACTACCACGACCGTCGCCGCCGCCGCCGCGGCCTCGAACTCAAATGTTGCTGTTCAGCAGCAGAAGCTCCGGGAGGAGGAGGAAAACCAACAGCTGAATCAAATCGTCCACCGCCAATCGACCACGGTGGACGACGCTATGGAAGCTTCTGGTAGCCGAAAGGCTACCGCACTGGTTGGTGGCAGTGGAAGAATCTCGGAATTTCAACCGCAACATTTGAACGACGATAACGGTAGTAGTGGCAAATACAACAGTGGCGGTTCTGGTTTCTTTCCGCCGACTTTGGACACTGATATAGCTGATACCATTAAGTCTTTCTTTCCGATGGTGGGGCCGGGGGAGGTTGCAACAACGACGTCGTCCTTTCATAACTATCCTCCACCGCCTGATTTGCTTTCGCGTACAACTAGCGGCGGAAGCAACCACAACCACCACCACCACCACCACCATCACCATCACCAACAGCAAGATCTGCGGCTCTCGCTGCAGTCTTTCCAGGACCCATCGATTCTTCTTCAGCACCACCAACAACAGCAGCAGCAGCCGCCACACCAACAGCATGTTCACGAGCAAGTGCTCTTCGCCGGAACCACCGCACTAGCGTTCGACGGCGGTTCTTCCGGATGGTCTGAACAGCAGCACCACCAAGAGGAACAGGAGCATGGACGATTGCAGAGAATGGTGGCTTGGAATAATGCCGCTGCAGATGCTAGTAGCAGTGGCCATGCCAGTGGATTCATCTTCAACTCGTCGGCGACGGCGGCTGTGCCGTCTCCTGCGATGTTTGGCCATGGCCAGTTTTTTCCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCTTCGTTTCGTGCTTGGATAGATCCTTCTTCGATCGCCACGGCTGCCATGACTGTGGATCACCACCACTATCTTTCACCGGCCGCGATCCATCAAGCTTCTATTGGGTTTGCCGGCTCTTCATCCGGTAGCTTCTCTGGCTTCCGCATACCAGCACGAATTCAGGGTGCGGAGGAGCACGACGGCGTATCTGACAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCATTGA 1398 0.5722 MGETQHHRPTSSRLGMRAVAGGGGGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWKPTATTTTVAAAAAASNSNVAVQQQKLREEEENQQLNQIVHRQSTTVDDAMEASGSRKATALVGGSGRISEFQPQHLNDDNGSSGKYNSGGSGFFPPTLDTDIADTIKSFFPMVGPGEVATTTSSFHNYPPPPDLLSRTTSGGSNHNHHHHHHHHHHQQQDLRLSLQSFQDPSILLQHHQQQQQQPPHQQHVHEQVLFAGTTALAFDGGSSGWSEQQHHQEEQEHGRLQRMVAWNNAAADASSSGHASGFIFNSSATAAVPSPAMFGHGQFFPQRGPLQSSNTPSFRAWIDPSSIATAAMTVDHHHYLSPAAIHQASIGFAGSSSGSFSGFRIPARIQGAEEHDGVSDKPSSASSDSRH* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1561 465 Coils Coil 119 145 - -
Ahy3g1561 465 MobiDBLite consensus disorder prediction 1 25 - -
Ahy3g1561 465 MobiDBLite consensus disorder prediction 177 199 - -
Ahy3g1561 465 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 465 IPR005333 GO:0003700
Ahy3g1561 465 MobiDBLite consensus disorder prediction 443 465 - -
Ahy3g1561 465 MobiDBLite consensus disorder prediction 228 269 - -
Ahy3g1561 465 MobiDBLite consensus disorder prediction 228 249 - -
Ahy3g1561 465 PANTHER TRANSCRIPTION FACTOR TCP4 1 465 - -
Ahy3g1561 465 MobiDBLite consensus disorder prediction 250 265 - -
Ahy3g1561 465 MobiDBLite consensus disorder prediction 442 465 - -
Ahy3g1561 465 Pfam TCP family transcription factor 41 149 IPR017887 -
Ahy3g1561 465 MobiDBLite consensus disorder prediction 170 199 - -
Ahy3g1561 465 ProSiteProfiles TCP domain profile. 42 100 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1561 Ahy-Chr3 28295585 28298880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1561 9 465 TCP Transcription Factor Family AT1G53230 45.127 3.48e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy3g1561 TCP 7.40E-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1561 - - aip:107630075 714.146