Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1560 ATGGAGCTCAAAAAGGGAAAGCTTGTCAGGTTTTACTCGGACGGTAAAAAGCAGAAAGAACCATTGTGGAGAGCAACTGAACCACCAACACATGAGAAGTCATCCTCTGGATACAAGGTTGCCTCGTCTTCCTTGCATAAAGCTAGCAATGTATTTCCATCAGGAAAGAATATATTTGCCGAAACATTTAGAAGTCGAGGATCTAAGGTATTCCCCGAAGATCATGAGCCATGGAGCAAAATAATTCTTGACCCGGGCAGTGAGATTGTCCTGAAATGGAACCGGATTTTCATAGTTTCATGCTTGGTTGCTCTTTTTATTGATCCACTTTACTTCTATTTGCCTAGTGTCAGAGGGAATACAATGTCTGCGTGTGTGCGGACAGACCTAACATTACGGATTATTGTGACCTTTCTTCGGACTATTGCTGACATCTTTTATCTGTTGCACCTAATAATTAAGTTCAGAACAGCATATATCGCACCGAGTTCACGGGTTTTTGGCAGGGGTGAACTAGTCATGGACCCAAAGAAAATTGCAAGGAGATATATTAGATCTGATTTCTTCATTGACGTTATTGCCACACTACCTCTACCACAGGTTTTAGGGGCATCATGGTACCTTTTGTCTGTGGATCGGTATACTACATGCTGGAAATCAATTTGCAAAAAAGAACCTAATCCTGAGAAATGCTTCAGTTACCTGGACTGCAGTCTTACTAATAACATGCAGCACAGGATATGGGCAAATACTACAAATGTGTTTAACAGATGTGATCCCAATAATGATATTGATTTCAAGTTTGGAATATTTGAAAGTGCTGTGAAAAAGCAAGTGGTCTCTTCAAACTTCATCCCAAAATACTTTTATTGTTTGTGGTGGGGGTTGCAGCAGTTAAGTTCTTATGGGCAGAACCTAGACACAAGCACTTTCATTGGAGAAACATCCTTTGCTATTCTTATTGCGATCATGGGTCTTGTATTATTTTCCCATTTGATTGGGAACATGCAGACATATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGACTTAAGCGAAGAGACACAGAGGAATGGATGAGGCATCGCCAGCTCCCTGAAGATTTAAGAAGCCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCAACTCGTGGAGTTGATGAAGAAACCATTCTACGTGCATTACCTGCAGATCTTCGCCGCGATATCCAGCGCCACCTATGCTTAGACCTTGTTCGGCGAGTTCCATTCTTCTCACAGATGGATGATCAACTTCTTGATGCAATATGTGAGCGGCTGGTATCATCTCTCAGCACTCTAGGTACCTACATTGTTCGCGAGGGAGACCCTGTTACTGAAATGCTCTTCATTATCAGAGGTAGATTGGATAGTTCTACTACAAATGGTGGCCGAACCGGTTTCTTCAACTCAATCATACTGAGGCCTGGGGATTTTTGTGGTGAGGAACTACTTTCTTGGGCTTTACTACCAAGATCAACCACAAACTTACCATCCTCAACTAGGACAGTTAAAGCCCTAAGCGAGGTAGAAGCTTTTGCTCTTCGAGCGGAGGACCTCAAGTTTGTAGCTAATCAATTTAGGCGCCTCCACAGTAAGAAGCTGCAGCACACCTTCCGATTTTACTCCCACCACTGGAGAACTTGGGCAGCCTGCTTTATTCAGGCTGCTTGGCGACGGTACAAGAAAAGGATGTCTGCCAAAGACCTCAGTTTGAGGGAATCCGTTCCTTTAGATGAGACGGCGGTCAGTGAGCGAGTAGACGATGAAGAGGAATACCCTGCCGTCTCGAATTCATCTCAGACTAAATTGAACCTTGGGGTAACAATACTTGCTTCAAGGTTCGCGGCTAACACAAGAAGGGGTGCTTTGAAGATAAAAGATGACCTGCCTAAGTTACCGAAACCCGAAGAACCTGACTTTTCTACCGAAGCTGACGATTAG 1968 0.4329 MELKKGKLVRFYSDGKKQKEPLWRATEPPTHEKSSSGYKVASSSLHKASNVFPSGKNIFAETFRSRGSKVFPEDHEPWSKIILDPGSEIVLKWNRIFIVSCLVALFIDPLYFYLPSVRGNTMSACVRTDLTLRIIVTFLRTIADIFYLLHLIIKFRTAYIAPSSRVFGRGELVMDPKKIARRYIRSDFFIDVIATLPLPQVLGASWYLLSVDRYTTCWKSICKKEPNPEKCFSYLDCSLTNNMQHRIWANTTNVFNRCDPNNDIDFKFGIFESAVKKQVVSSNFIPKYFYCLWWGLQQLSSYGQNLDTSTFIGETSFAILIAIMGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTLGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPRSTTNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSAKDLSLRESVPLDETAVSERVDDEEEYPAVSNSSQTKLNLGVTILASRFAANTRRGALKIKDDLPKLPKPEEPDFSTEADD* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1560 655 Gene3D Helix hairpin bin 347 410 - -
Ahy3g1560 655 SUPERFAMILY Voltage-gated potassium channels 87 341 - -
Ahy3g1560 655 ProSiteProfiles cAMP/cGMP binding motif profile. 419 503 IPR000595 -
Ahy3g1560 655 Pfam Cyclic nucleotide-binding domain 443 530 IPR000595 -
Ahy3g1560 655 Pfam Ion transport protein 202 345 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ahy3g1560 655 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 201 652 - -
Ahy3g1560 655 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 53 201 - -
Ahy3g1560 655 Gene3D Jelly Rolls 417 537 IPR014710 -
Ahy3g1560 655 CDD CAP_ED 419 550 IPR000595 -
Ahy3g1560 655 PRINTS EAG/ELK/ERG potassium channel family signature 314 325 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ahy3g1560 655 PRINTS EAG/ELK/ERG potassium channel family signature 151 160 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ahy3g1560 655 PRINTS EAG/ELK/ERG potassium channel family signature 382 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ahy3g1560 655 PRINTS EAG/ELK/ERG potassium channel family signature 288 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ahy3g1560 655 PRINTS EAG/ELK/ERG potassium channel family signature 332 341 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ahy3g1560 655 SUPERFAMILY cAMP-binding domain-like 349 541 IPR018490 -
Ahy3g1560 655 MobiDBLite consensus disorder prediction 634 648 - -
Ahy3g1560 655 SMART cnmp_10 419 550 IPR000595 -
Ahy3g1560 655 MobiDBLite consensus disorder prediction 634 655 - -
Ahy3g1560 655 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 201 652 - -
Ahy3g1560 655 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1560 Ahy-Chr3 28241689 28249100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1560 200 655 Ion Channels AT4G30360 74.348 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1560 K05391 - mnt:21395192 813.142