Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1541 ATGCTCTCTTCCGATTCCACCAAATCGCCAATGTCTCACCAGGGCGAATCATCCGACTCGAAATCGGGGAAGAAGGACTTCTCCACCGCGATTCTCGAACGCAAGAAGTTGCCGAAGAGATTGGTCGTCGATGAAGCCGTCAACGACGATAATTCCGTCGTGGCCATGCACCCACAGACAATGGAAAAACTCCAACTTTTCCGCGGCGACACTATTCTCATCATTGGAAAGAAACGGAAGGACACTATTTGCATTGCACTTGCTGATGACAATTGCGAGGTGCCCAAAATCAGGATGAACAAGGTTGTGAGGTCCAATTTGAGGGTTCGTCTTGGTGATGTTGTGTCTGTGCATCAGTGCCCTGATGTTAAGTATGGGAAACGAGTCCACATTCTGCCTATTGACGATACCGTCGAAGGTGTCACTGGAAATCTGTTTGATGCTTACTTGAAACCTTATTTCTTGGAGGCTTATCGTCCTGTCAGAAAAGGAGATTTATTCCTTGTCCAAGGAGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGTGAAGGTGAACCCGTGAAACGGGAGGATGAAGAAAGGCTGGATGAAGTTGGATACGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATCCGTGAGCTTGTAGAACTTCCACTGAGACATCCTCAGCTTTTTAAGTCGATTGGTGTTAAGCCACCCAAGGGAATTTTGCTCTATGGACCCCCTGGCTCTGGTAAGACACTAATAGCAAGAGCTGTTGCTAATGAAACCGGAGCTTTCTTCTTTTGTATTAGTGGTCCAGAGATTATGTCCAAATTGGCCGGAGGGAGTGAAAGCAATCTCAGGAAAGCATTTGAAGAAGCAGAAAAGAATGCTCCATCCATCATATTTATTGATGAGATTGATTCAATTGCACCCAAGCGGGAGAAGACAAATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGACGGATTGAAGTCTCATGCACATGTTATTGTTATTGGTGCAACAAATCATCCAAATAGCATTGACCCAGCATTAAGAAGGTTTTTTGATAGAGAAATTGACATTGGTGTTCCTGATGAAGTCAGTCCACTTGAAGTCCTTCGCATACATACCAAGAACATGAAGCTTTCTGATGAGGTTGATTTGGAGAGAATATCAAAAGATACTCATGGGTATGTTGGTGCCGACCTTGCTGCTCTTTGCACTGAAGCTGCTCATACTGAGAGAGTGGTTAAAGACAAAGTCTTGGTGTTCAATTTTACTGATGTGGGAAAACTTCCCCCTCATGTTCTTAACGGCGAGAGAGCCGTTGTGCTATTCTTCATCGCTCATATACTCTTCTCTCTCCCTTTCTCTCTCTTACTCTCCCATGGTGTCCCTCTTTCTTTCCTCGCCCTTGCAGCCTCCTTCATTGAGATTAGCTATGACGCTGCCGCTTCTTCCTCTTCCCTCTTCCGCACCAGACGCGGTGCTTCTTCCGGAATCCTGCTCGGCGCCGTGACTCTCCCTGCTCTTCTACTCTCCAAGTTGACGCAATTATCAAGAGGATTCTCATTGGCACAAGTTAATCTTCAAGAGATTCACTATACGACATTGCAATACTGGGCAACATCTGCCACCAGCTTCGTGGTGCTCGTGTTCCTCAGTTTTGTTCTGTCGCACCGCACTCCTCTTTCGCGTAAGGATTGGGGTTTAGGGTTTGGCTTGTGCTTCTTGTTCTTGCAAGCTTCACTGTGCTTTCTGGCACTTGTTTCCACCTCCTCCCAAAGTGGTTTGCAACTTGCATGCAAGCTGTCATGGGTCCTTGGTCATGGATTGGCAGCGGTGATGCTAATTCAGCATTTTCTTGGAACTTTTCCATCTTGTGCTTCCATTGGGGAAGCTCTTTTGGCGACAGCTGGTATTGTTCTCTATTTTGGTGATATGCTGTTGCTTACTGTTATGAGGCTATATGGACTACTGATGTCATCAGATTTGGTCACTGCAGAGTATGAAACTAGTCGAAGTGAGATAGGCATCATAATTCAGGGAGTGCTGCTTGGCCTTCTGCTATATCCGATACCTTTCAAATATATTCTTCGTGTATGGGAATGGTCCACAAATACAGCTTCTGCTGAGTCAAGAAGATACAGTGAGATTAGAAGATCGGTTATTTTTATTTCTCTCTTTGTATTGGTCATGGTTGGGATTGTACCATTATGGATGCAGTTTGTGCATGAATTTCATCTGCATCCTATTCTCTGGGTCCTATCCTTTGTTTTATCAGATCCATTCAAAAGACTATCACTGTGTATCTATTGGGTTTGTGTAATATGTCTCTCTGTGTTATATGTCTATGACATCTCTAAGAACAGTAGGGTTGAGAGAATTCTTCTGCGGAAATACTACCATCTATTGGCTGTCTTGATGTTTGTACCTGCTCTTATCTTACAGCCAGAGTTTCTTGATCTGGGTTTTGGTGCAGCTCTGGCAATTTTCTTGACGTTAGAAATTATTCGAATATGGAGAATCTGGCCTTTGGGACAACCAATTCATCAGTTTATGAATGCATTCACTGATCACCGGGATTCTGATTTTCTAATTGTCAGCCACTTCTCACTTTTACTTGGATGTGCACTTCCTATTTGGTTGTCTTCTGGTTACAATGATCGACCCCTTGCTCCTTTTGCGGGAATATTGAGTCTAGGAATTGGAGATACAATGGCATCATTAATTGGGCACAAGTATGGTGTTCTAAGGTGGAGTAAAACTGGCAAGAAAACAATTGAAGGTACTGCAGCTGGTATAATGTCTGTTCTAGCTTCCTGCTGGTTACTCCTTCTGTTGTTAGCTTCAAGTGGATACATTTTCACCCAGCATTGGTTCTCGTTGCTTCTATCTGTGACTGTTAGTGGTTTGTTGGAGGCATACACAGCACAACTTGACAATGCATTCATACCACTATTTTTCTATAGCCTTCTATGCTTGTAG 3048 0.4393 MLSSDSTKSPMSHQGESSDSKSGKKDFSTAILERKKLPKRLVVDEAVNDDNSVVAMHPQTMEKLQLFRGDTILIIGKKRKDTICIALADDNCEVPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVQGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCISGPEIMSKLAGGSESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSHAHVIVIGATNHPNSIDPALRRFFDREIDIGVPDEVSPLEVLRIHTKNMKLSDEVDLERISKDTHGYVGADLAALCTEAAHTERVVKDKVLVFNFTDVGKLPPHVLNGERAVVLFFIAHILFSLPFSLLLSHGVPLSFLALAASFIEISYDAAASSSSLFRTRRGASSGILLGAVTLPALLLSKLTQLSRGFSLAQVNLQEIHYTTLQYWATSATSFVVLVFLSFVLSHRTPLSRKDWGLGFGLCFLFLQASLCFLALVSTSSQSGLQLACKLSWVLGHGLAAVMLIQHFLGTFPSCASIGEALLATAGIVLYFGDMLLLTVMRLYGLLMSSDLVTAEYETSRSEIGIIIQGVLLGLLLYPIPFKYILRVWEWSTNTASAESRRYSEIRRSVIFISLFVLVMVGIVPLWMQFVHEFHLHPILWVLSFVLSDPFKRLSLCIYWVCVICLSVLYVYDISKNSRVERILLRKYYHLLAVLMFVPALILQPEFLDLGFGAALAIFLTLEIIRIWRIWPLGQPIHQFMNAFTDHRDSDFLIVSHFSLLLGCALPIWLSSGYNDRPLAPFAGILSLGIGDTMASLIGHKYGVLRWSKTGKKTIEGTAAGIMSVLASCWLLLLLLASSGYIFTQHWFSLLLSVTVSGLLEAYTAQLDNAFIPLFFYSLLCL* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1541 1015 PANTHER AAA-FAMILY ATPASE 15 450 - -
Ahy3g1541 1015 Gene3D - 385 432 - -
Ahy3g1541 1015 SUPERFAMILY ADC-like 37 120 IPR009010 -
Ahy3g1541 1015 ProSitePatterns AAA-protein family signature. 355 373 IPR003960 GO:0005524|GO:0016887
Ahy3g1541 1015 CDD AAA 221 382 - -
Ahy3g1541 1015 Pfam ATPase family associated with various cellular activities (AAA) 255 382 IPR003959 GO:0005524|GO:0016887
Ahy3g1541 1015 Pfam Cell division protein 48 (CDC48), domain 2 142 205 IPR004201 -
Ahy3g1541 1015 SUPERFAMILY Cdc48 domain 2-like 122 214 IPR029067 -
Ahy3g1541 1015 SMART CDC48_N_2 40 123 IPR003338 -
Ahy3g1541 1015 SMART AAA_5 251 385 IPR003593 -
Ahy3g1541 1015 Gene3D - 17 122 - -
Ahy3g1541 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 433 IPR027417 -
Ahy3g1541 1015 SMART CDC48_2_2 140 206 IPR004201 -
Ahy3g1541 1015 Pfam AAA+ lid domain 406 432 IPR041569 -
Ahy3g1541 1015 Pfam Cell division protein 48 (CDC48), N-terminal domain 40 121 IPR003338 -
Ahy3g1541 1015 Gene3D - 123 217 - -
Ahy3g1541 1015 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 15 450 - -
Ahy3g1541 1015 MobiDBLite consensus disorder prediction 1 27 - -
Ahy3g1541 1015 MobiDBLite consensus disorder prediction 1 17 - -
Ahy3g1541 1015 Gene3D - 218 384 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1541 Ahy-Chr3 27807564 27814606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1541 214 431 Calmodulin-binding Proteins AT3G56690 46.396 4.37e-51 194