Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1385 ATGGGGATGAGGAGCAATAGTAATAAAGGAGGAGAAATTATTCAAGTTGAAGGGGGCCACATTGTGAGGTCCACAGGGAGAAAAGACCGCCACAGTAAGGTCTACACCGCCAAAGGACCACGCGATAGAAGGGTCAGGCTATCCGCCCACACCGCCATCGAATTCTACGACGTTCAGGACCGTCTCGGCTACGACCGCCCCAGCAAGGCCGTCGATTGGCTCATCAAGAAAGCTCAGCCCTCCATCGACAAGCTAGCCGAGCTTCCTCCCTGGCACCCACCTCTCTCAGCCGCTCCGCTGCAGCAGGATCAAGAAGAAGAGGAGGAGGAGGAGGAACATAATAATGATATTATTAATCAGCAATTCCATTCGTCTTCACACTTGCTTCAGATTCAGCAACAGCAGCAACAAAACCTTGAAACTGACCCCATAGCTTTCTTCCCTACAAGCTCAGCTACTCCCTCTATGAATTTCCAAAACTACCCTCACGAGATGATTTCAAGAACCGCCAACAACAACGTTAACCCCATTACGGAAGATCTTGGACTTTCACTCCACCCGTTTCAACAAGCACCTTCCAATCAACATCAAGGTACTCTCTTTGCTGCTGGATCCAGTAACAACGTCGGATTTGAGAGCCAGTATCAGAAGATTGTAGCTTGGAACAACGAAGCTGCTACCATGGATATCAACAGGGTAGGGTTCATGGTGAACCCGCAGCAGAATCATCATCATCATCCATTTCTAGGCCAAAGTGTGAGTGGGTCCCTTCAGTCAAGTTTTCCACCACCATCACTTAGATCTTGGGGTGAAATTCCGATGAACCCAAACTCCTCGGAACAACAACACAGCAGGCCACAACAACTGATTCACCATGCTTCCATATTTGGAAGCAGGTTTGTTTCTGATGGATTAGCAGCAGGGTTTTGCATTCCAGCTAGAATTCAAGGCGACCAAGAGAACCATCATGGAGTTGCTTCTAACACCACTCCATCTTCTGCTTCTCCTCATTCTCACCACTGA 1023 0.4858 MGMRSNSNKGGEIIQVEGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAQPSIDKLAELPPWHPPLSAAPLQQDQEEEEEEEEHNNDIINQQFHSSSHLLQIQQQQQQNLETDPIAFFPTSSATPSMNFQNYPHEMISRTANNNVNPITEDLGLSLHPFQQAPSNQHQGTLFAAGSSNNVGFESQYQKIVAWNNEAATMDINRVGFMVNPQQNHHHHPFLGQSVSGSLQSSFPPPSLRSWGEIPMNPNSSEQQHSRPQQLIHHASIFGSRFVSDGLAAGFCIPARIQGDQENHHGVASNTTPSSASPHSHH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1385 340 MobiDBLite consensus disorder prediction 320 340 - -
Ahy3g1385 340 MobiDBLite consensus disorder prediction 88 114 - -
Ahy3g1385 340 ProSiteProfiles TCP domain profile. 27 85 IPR017887 -
Ahy3g1385 340 PANTHER TRANSCRIPTION FACTOR TCP4 8 340 - -
Ahy3g1385 340 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 340 IPR005333 GO:0003700
Ahy3g1385 340 MobiDBLite consensus disorder prediction 1 32 - -
Ahy3g1385 340 Coils Coil 100 121 - -
Ahy3g1385 340 MobiDBLite consensus disorder prediction 321 340 - -
Ahy3g1385 340 MobiDBLite consensus disorder prediction 246 288 - -
Ahy3g1385 340 Pfam TCP family transcription factor 26 138 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1385 Ahy-Chr3 23047340 23049052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1385 6 340 TCP Transcription Factor Family AT1G53230 39.791 1.02e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ahy3g1385 TCP 3.00E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1385 - - pvu:PHAVU_005G097200g 310.842