Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1352 ATGCTTGGTGTGTCATCACCTCCTGTGGGGAGTACAAGAAGAGATGAAAGAATGGAGAGCTTCAAGTCGATTGGGGTGTCATCAAAAGACGATGGATTTGGCGAACTGTCTGAAGGAAGCTTGTTGGAAAGCATCAATTTTGATGACCTCTTCGTCGGCATCAACATGGAAAGCGATGTGTTGCCAGATTTGGAGATGGAGGTTGATGTCTTTGCCCAATTTTTTGACAACCCTAAGGCAGGGGCATATCAATCTTCAATTCACAATAAACTTGCTTCCAATAAGAATGAGGAGTCTGTAGTTGTGAATCCTCCTGCGAAGAATGCTGGAAAAGGAAGAAAACCATCGTCTCAATCCAAGAGTAATAATCCTCAAGCCAAGATTAGAAAAGTCAAGGTGGATTGGACCCCAGAGTTACATAGGAGATTTGTACAAGCCGTGGAACAACTTGGAGTGGATAAGGCAGTACCTTCTAGGATTTTGGAGATTATGGGAATTGATTGCCTCACTCGCCATAACATTGCAAGTCACCTTCAGAAATATAGATCCCATAGGAAACATTTACTAGCGCGTGAAGCTGAAGCAGCAAATTGGAATCAAAGGAGACAAATGTATGGAGGAGGTATAGCAGGGAAGAGAGATATGAGTAGCCCATGGGTAGCACCTACCATGGGTTTCCCTCCAGTCACTTCAATGCACCATTTTAGACCATTACATGTATGGGGTCATCCCTCCATGGACCAATCTTTTATACACTCTCCGACTCATTCACTGTCGCGGCCGTGGGTGCAACCTGTTGCTCTCCCGTTCTGGCATCCTCACCACCAACTAGCTCAAAACATGCTAACCCCAGGATCACCGTGTTTTCCACAGCCTCTGACAACAAGGAAATATGGATCAGGAGGTGTGGCAGGCAGTATTCCAGCAACATCACCACATCCACATGTTATGTACAAAGCAGCAGATCCTCCCATTAACGGCCTCTCCAGCCCCAACCCAAACCCCATCATTGACTTCCATCCGTCAAAGGAGAGCATAGATGCAGCTATTGGAGATGTTCTATCAAAGCCATGGCAGCCACTACCTCTTGGACTTAAAGCTCCAGCACTTGACAGTGTTCTAACTGAATTACAAAGACAAGGAATTTCAAATATTCCACCCTCTTGTGCTTGA 1173 0.4552 MLGVSSPPVGSTRRDERMESFKSIGVSSKDDGFGELSEGSLLESINFDDLFVGINMESDVLPDLEMEVDVFAQFFDNPKAGAYQSSIHNKLASNKNEESVVVNPPAKNAGKGRKPSSQSKSNNPQAKIRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAANWNQRRQMYGGGIAGKRDMSSPWVAPTMGFPPVTSMHHFRPLHVWGHPSMDQSFIHSPTHSLSRPWVQPVALPFWHPHHQLAQNMLTPGSPCFPQPLTTRKYGSGGVAGSIPATSPHPHVMYKAADPPINGLSSPNPNPIIDFHPSKESIDAAIGDVLSKPWQPLPLGLKAPALDSVLTELQRQGISNIPPSCA* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1352 390 MobiDBLite consensus disorder prediction 93 128 - -
Ahy3g1352 390 SUPERFAMILY Homeodomain-like 128 187 IPR009057 -
Ahy3g1352 390 PANTHER TRANSCRIPTION ACTIVATOR GLK1 12 85 IPR044825 GO:0003700|GO:0045893
Ahy3g1352 390 PANTHER TRANSCRIPTION ACTIVATOR GLK1 86 390 IPR044825 GO:0003700|GO:0045893
Ahy3g1352 390 Gene3D - 127 188 - -
Ahy3g1352 390 Pfam Myb-like DNA-binding domain 133 182 IPR001005 -
Ahy3g1352 390 MobiDBLite consensus disorder prediction 112 126 - -
Ahy3g1352 390 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 12 85 - -
Ahy3g1352 390 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 86 390 - -
Ahy3g1352 390 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 186 IPR017930 -
Ahy3g1352 390 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 130 184 IPR006447 GO:0003677
Ahy3g1352 390 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1352 Ahy-Chr3 22144007 22150252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1352 1 245 G2-like Transcription Factor Family AT5G44190 45.522 2.83e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ahy3g1352 Myb_DNA-binding 4.80E-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1352 - - gmx:100775671 438.343