Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1328 ATGTCACTCCACGCTTTCAAGGAAACTCTACTAAGACCTTGCACAACAACCCAACAACAACAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTATCAATTTCTCAAAGCCAAACACGCCCTTACTCCTTTCTTCACGATTCACACCTTCCCGTCCCAAGAAAACTCCCAAAGTCCACTCTTTCCCAGCAGCTCCGCCGCCTCCAAGAAGACGACGCCGACGACCACACATTTTCTTGGCCGCCGCTTCAGCTCCACAATTCGGTTAAGAAGCGAGAACCGGAAGAGAAAGAAGCTGATGATGGTGATGACGAGGATGGAGAAGAACAGGAGGAACTGCAGGTGAAGAGGGGAAAATTCGGAATAGCTAAAATTTCACAATTTCAGTTTGATCACACTGGACCGTTTGAGCCTCTTGTCCTTTCTTCAGATGCAGAAGTTCCAGTCATTCAGGTTCCCGCAACTATAAATTGTAGACTACTTGAGCATCAAAGAGAGGGAGTGAGATTTCTGTATGGTTTGTATAAAAACAATCATGGTGGTATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTATCTTTGGTAAGGAAAGAGACTCTATGCTGGGTGAAAATGACAAAGAGAAGAGAGACCCTGTATTGATAATCTGTCCAACTTCTGTCATTCATAATTGGGAGAGTGAGTTCTCTAAATGGGCTAATTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATCTGATACATGAGAAACTAGAAGCAAATGGAGTGGAGATACTTATTACAAGTTTTGACACTTACAGAATTCACGGAAGTTCCTTGTCAGATTTCGAATGGGGCATTGTGATTGTTGACGAGGCTCACCGGCTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCTTAGACGTTATGGTCTTACAGGGACCATAATGCAAAATAAGATAATGGAGTTGTTTAATCTCTTTGACTGGGTTGCACCTGGATCACTTGGGACACGGGAGCACTTTCGTGAGTTCTATGATGAACCCCTTAAACATGGTCAGAGGTCATCTGCTCCTGACAAGTTTGTCCAAATTGCTAATAAAAGAAAACAACACCTTGTGAATGTTCTTCATAAATATTTGTTGAGAAGGACAAAGGAAGAGACAATTGGACATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCCATGAGTGATTTGCAAAGACGTGTTTACAAGAGAATGTTACAGCTTCCTGATATCCAATGCCTTATAAACAAGGACCTGCCTTGTAGTTGTGGTAGCCCACTTACACAAGTTGAATGTTGTAAGAGGACAGTACCAAATGGAATTATTTGGCCTTACCTTCACCGAGATAACCCTGATGGTTGTGATTCATGCCCTTTCTGCATTGTCCTTCCGTGCCTTGTCAAGCTTCAACAGGTAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGAGAAGCAAGGCAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCTCTGATATTGATTTGGTTGGCGGAAATATGCAGAGTGAGAGTTTCATGGATCTAAGTGATGTGAAACATTGTGGAAAAATGCGAGCACTTGAAAAACTTCTGTACTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCAGTGAGGATGCTTGACATACTGGAGAAATTTCTCATACGGAAAGGCTACTGCTTCTCAAGACTTGATGGGTCTACTCCGACAAATTTGCGCCAGTCTTTAGTTGATGATTTCAACTCCAGTCCTAGCAAACAAGTATTTTTGATATCAACTCGTGCCGGTGGGCTTGGGTTGAACCTTGTCAGCGCAAACCGGGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCCCAGGACAGGTCCTTTCGTTTTGGGCAGAAGCGACATGTTCTGGTGTTCCGTCTTCTTGCAGCCGGTTCGCTTGAAGAACTTGTTTATTCTCGTCAGGTGTATAAGCAGCAACTTTCAAACATTGCTGTCTCAGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGGGATTTATCTGACGAGCTATTTACTAGTGAAATCATTAAACTGCATGAAATGGGAAAGGAACATCACAATACAATAGAACAGGAAAAAGAAAATCTTTTAGAAGAAACTGATTCTCTAAGATCGGCGTCTGACACTGAAATATGTGCTGGAACTGCAAGCAACGTAGCAAGTAAACCAGATTTTGAAGACCTTGGAATTGTGTATGCTCATCGAAATGAAGACATTGTCAACTGTGGACCTGTGATTCAGGGGAAGATAGATAGCAGCATCCCTTCAAAGAGTGATAGCTTAGTCAAGCCAAGCATCTCTTCAGTCAACCAAAGAAATAAACCAGATTGTGTACCTAAAAAACAGAAAGCTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGCCTGCTTGCACATTCTATGGGCATGGAAGAGCTTGCATTTAGCAAATGGTTACTATCAGCAACTCCTAAGGAGAGGGAGGAAGTGCTTCGAGACTTCAAGAAGAAAAAGAAGACGCCTAATGGTTAA 2718 0.4187 MSLHAFKETLLRPCTTTQQQQSSSSSSSSSSSSSSSSLSISQSQTRPYSFLHDSHLPVPRKLPKSTLSQQLRRLQEDDADDHTFSWPPLQLHNSVKKREPEEKEADDGDDEDGEEQEELQVKRGKFGIAKISQFQFDHTGPFEPLVLSSDAEVPVIQVPATINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKERDSMLGENDKEKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIHEKLEANGVEILITSFDTYRIHGSSLSDFEWGIVIVDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSSAPDKFVQIANKRKQHLVNVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQRRVYKRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRTVPNGIIWPYLHRDNPDGCDSCPFCIVLPCLVKLQQVSNHLELIKPNPKDDPEKQGKDAEFAAAVFGSDIDLVGGNMQSESFMDLSDVKHCGKMRALEKLLYSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGICNLFRDLSDELFTSEIIKLHEMGKEHHNTIEQEKENLLEETDSLRSASDTEICAGTASNVASKPDFEDLGIVYAHRNEDIVNCGPVIQGKIDSSIPSKSDSLVKPSISSVNQRNKPDCVPKKQKAPLIDERKRTQYSLLAHSMGMEELAFSKWLLSATPKEREEVLRDFKKKKKTPNG* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1328 905 CDD SF2_C_SNF 549 678 - -
Ahy3g1328 905 Pfam Helicase conserved C-terminal domain 555 667 IPR001650 -
Ahy3g1328 905 MobiDBLite consensus disorder prediction 824 843 - -
Ahy3g1328 905 MobiDBLite consensus disorder prediction 1 120 - -
Ahy3g1328 905 MobiDBLite consensus disorder prediction 11 50 - -
Ahy3g1328 905 Pfam SNF2-related domain 182 438 IPR000330 GO:0005524|GO:0140658
Ahy3g1328 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 399 IPR027417 -
Ahy3g1328 905 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 22 895 - -
Ahy3g1328 905 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 723 IPR027417 -
Ahy3g1328 905 SMART helicmild6 584 667 IPR001650 -
Ahy3g1328 905 Gene3D - 144 398 IPR038718 -
Ahy3g1328 905 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 178 349 IPR014001 -
Ahy3g1328 905 Coils Coil 754 774 - -
Ahy3g1328 905 MobiDBLite consensus disorder prediction 824 849 - -
Ahy3g1328 905 Gene3D - 411 779 IPR027417 -
Ahy3g1328 905 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 558 711 IPR001650 -
Ahy3g1328 905 PANTHER SNF2/RAD54 FAMILY MEMBER 22 895 - -
Ahy3g1328 905 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 295 304 IPR002464 -
Ahy3g1328 905 SMART ultradead3 162 357 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1328 Ahy-Chr3 21729990 21736357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1328 556 697 RAD5 or RAD16-like Gene Family AT5G43530 39.437 1.78e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy3g1328 SNF2_N 2.70E-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1328 K20098 - gmx:100781003 1375.15