Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1309 ATGATTCAGGTTATTGCTTTCAATGATAAGCCTGTGAAGAATTTGAAGGGCTTGGCCACCATGATTGAGAACTGTGATGATGAGTTTCTAAAGTTTGATCTGGAATACCAACAGGATGTGACAGCAACTAAAAGAAATGAATTTGAGGATTATTTTTTGAAGCGAGAGTTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGGACAGGCAAAACAGCTGCATTTTACATTCCTGCATTGGAAAAAATTGACCAGAAACAATCTATCCTGGCATAG 351 0.3875 MIQVIAFNDKPVKNLKGLATMIENCDDEFLKFDLEYQQDVTATKRNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFYIPALEKIDQKQSILA* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1309 116 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 37 113 - -
Ahy3g1309 116 Gene3D - 51 115 IPR027417 -
Ahy3g1309 116 Pfam PDZ domain 2 40 IPR041517 -
Ahy3g1309 116 Gene3D - 1 50 IPR046449 -
Ahy3g1309 116 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 37 113 - -
Ahy3g1309 116 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Ahy3g1309 116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 110 IPR027417 -
Ahy3g1309 116 Pfam DEAD/DEAH box helicase 71 109 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1309 Ahy-Chr3 21320094 21322915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1309 48 109 Eukaryotic Initiation Factors Gene Family AT5G11200 48.387 6.31e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1309 K12614 - ahf:112717194 210.69