Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1296 ATGACCTCAGATCAGTACTTCAGGGATGCTGCTCGCGAAATCAGTACCTTCGAAGACATACCCTCCTTGGAAAAGTGGAAATCTTCCACCAATGCTGGTGTAGATTTCGATCGAAATGCCACCGAAGGATTCGACTGCAACATCTGCCTAGAATGTGTGCAAGAACCGGTAGTTACCCTTTGTGGCCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCATATCCAAACCATCTCTTCCAAAAACATGGAGCAGCAGAAGCCACAATGTCCTGTGTGCAAATCAGAAGTTTCTCAATCCTCCCTAGTTCCACTCTACGGCCGGAACCAAGTCGCAACGCCGTCCGGCAAAAATGCTCGCCAATTAGGCTCTTCGATACCTAGAAGACCCCCTGGCCGGAGACCATACAATCCTGCAGCATCTGTTTTACAATCTACTTCTGAAACTAGTCAACCTCGGCCATTCGACTCGATTCAAAGCAGTTACACTTCAACATCTGGAATTTTTGGGAGTAGCAACCCAAGGATCAGAAGGCAATTGATGGAAGCTGATGAATCACTCAGTAGAATATGTTTTTTCCTCTTCTGCTGCTTGGTTATGTGTCTTCTCTTGTTCTGA 621 0.467 MTSDQYFRDAAREISTFEDIPSLEKWKSSTNAGVDFDRNATEGFDCNICLECVQEPVVTLCGHLYCWPCIYKWLHIQTISSKNMEQQKPQCPVCKSEVSQSSLVPLYGRNQVATPSGKNARQLGSSIPRRPPGRRPYNPAASVLQSTSETSQPRPFDSIQSSYTSTSGIFGSSNPRIRRQLMEADESLSRICFFLFCCLVMCLLLF* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1296 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 153 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy3g1296 206 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Ahy3g1296 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 162 206 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy3g1296 206 SMART ring_2 46 94 IPR001841 -
Ahy3g1296 206 CDD RING-HC_AtRMA_like 44 96 - -
Ahy3g1296 206 MobiDBLite consensus disorder prediction 115 163 - -
Ahy3g1296 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 126 IPR013083 -
Ahy3g1296 206 SUPERFAMILY RING/U-box 38 101 - -
Ahy3g1296 206 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Ahy3g1296 206 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Ahy3g1296 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 162 206 - -
Ahy3g1296 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 153 - -
Ahy3g1296 206 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1296 Ahy-Chr3 20901513 20904085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1296 44 206 C3H Transcription Factor Family AT4G28270 40.761 1.72e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1296 K10666 - gmx:100785491 204.527