Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1293 ATGGAGAATGATGGCAAAGAGTCGTATAAGGATGGTGATCAATTTGAGGATTTAAGTGTTGAGTATGAGTGCAGTTCCGATGAAAGTGATGATATGGTGGATGTAACTGTATATGAAGCAGAGGCAGATATAATTAATGCTGGTGGTTTGGAAAAGTTGATAACTGATTTGACCATCGAAGACATATTGGGACTGGCGTTTGATACAGAATCTCAAGTTTGTGAATTTTATGCCAAATATGCCAAGTGCTATGGATTTGTGTCCCGAAAAGACTTGAAGACGGTGGATGCTAATGGCAACATTAATACAAGACAGTTGGTTTGCAATAAAGCAGGAGAAAGACATTGGAAGCACATTAAAAGGGACAATCGGCAAAGGAAGCATAGGGCAATTACTCGTGTCAACTGCAAGGCGAGGATTCGGTTCATTCGTCACTATAGAACGGGTAAGTGGAAAGTCAGTGTCTTTGAGAGTGAACACAATCATCCACTGTGTCCACCTAAGTACAGACATCTTATTGCCGCGAATCGTGGGCTTGATGAGGCCGATAAAATACAAGCAGACAGCTTGCGAGCATGTGATGTTAAAACTTGCCACATAATGGGTTACATGGTTTCCCAAAAAGGTGGATATGATAAAGTGGGTTTTACTAGCAAAGACTTACATAACCACATTAGTAAGACTAGGCGTGGCAAAGTGAAAGACGGTGATGCATTTGCTGCGTTGGCCTATCTGTTTTCTAAGGCAGATAGTGACCCGTTATTTCTAGGAAAGTTCACCTTAAAGGATGGTAGGTTGGATAATTTGGTATGGGCTGATGGAGAAAGCGTTGTTGATTACGAATGTTTTGGCAATGTACTGGCTTTTGACACCACTTACAAGAAAAATGTATACAACAAGCCCTTAGTCATATTTTCAGGGACCAACCACCATGGCCAGACGACTATCTTTGGATGCGCTCTGCTCTCAGATGAAAAGTCCGAAACTTTCAAGTGGGCACTGAAGGAATTTTTGGAAATCATGTCAGGAAAACTACCCGGAGGCGTTGTAACAGACGGAGACCGTGCTATGAGAGAGGCTATCTTAAAAAGATGGAACGAGATCATATCCAAATATGGACTTGCCGAGAATGAATGGGTCCAGGTCATTTATAATGACAGAATGAAGTGGGCTACCGCATATTTGAAGGAGCACTTCTTTGGCCGCATAAGAACTACATCACAGTGTAAAGGAATTCATTCATTATTGAAGAACTATGTTGACATTAAAACCAGTCTCCTTGAATTCATGCATAAATTTAGTGAAGTACTAAGGCATTACCGAAACAACCATCTTACTGCTGACTTTGATACCTTTTATAAGTTTCCTGTTTTGACTACGTGCTTGGAAAGTTTTGAGAAACAAGCTGCTGAACTTTATACTAGAAATATTTACAAACTTGTGAAAGATGAGATAGAAGCAGCAGGTGCTTTAAATGTGACTGAATGCCCAAATAGTGGAGACATTGTTGAGTACAGCACGAGTGAGTATTTTAATCATCAATGGGAATTTAAAGTGTCTTACAATAAAGACAAGGACCTGTTTGCGTGTGAGTGCAGGCTATTTGAGACTCATGGACTACCGTGCTCCCACATCTTTGGGGTCTTGAAGCATCGCAATGCAAAATGCGTCCCTACATCTCTTATCCTGAAAAGATGGACAAGAGATGCAAAGAGTGATTTTATATGCTCAACTGGCGAGTAA 1743 0.4079 MENDGKESYKDGDQFEDLSVEYECSSDESDDMVDVTVYEAEADIINAGGLEKLITDLTIEDILGLAFDTESQVCEFYAKYAKCYGFVSRKDLKTVDANGNINTRQLVCNKAGERHWKHIKRDNRQRKHRAITRVNCKARIRFIRHYRTGKWKVSVFESEHNHPLCPPKYRHLIAANRGLDEADKIQADSLRACDVKTCHIMGYMVSQKGGYDKVGFTSKDLHNHISKTRRGKVKDGDAFAALAYLFSKADSDPLFLGKFTLKDGRLDNLVWADGESVVDYECFGNVLAFDTTYKKNVYNKPLVIFSGTNHHGQTTIFGCALLSDEKSETFKWALKEFLEIMSGKLPGGVVTDGDRAMREAILKRWNEIISKYGLAENEWVQVIYNDRMKWATAYLKEHFFGRIRTTSQCKGIHSLLKNYVDIKTSLLEFMHKFSEVLRHYRNNHLTADFDTFYKFPVLTTCLESFEKQAAELYTRNIYKLVKDEIEAAGALNVTECPNSGDIVEYSTSEYFNHQWEFKVSYNKDKDLFACECRLFETHGLPCSHIFGVLKHRNAKCVPTSLILKRWTRDAKSDFICSTGE* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1293 580 ProSiteProfiles Zinc finger SWIM-type profile. 517 553 IPR007527 GO:0008270
Ahy3g1293 580 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 56 361 IPR031052 GO:0006355
Ahy3g1293 580 SMART 26again6 528 555 IPR006564 GO:0008270
Ahy3g1293 580 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 56 361 - -
Ahy3g1293 580 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 363 575 - -
Ahy3g1293 580 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Ahy3g1293 580 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 363 575 IPR031052 GO:0006355
Ahy3g1293 580 Pfam MULE transposase domain 286 366 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1293 Ahy-Chr3 20856033 20857913 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy3g1293 FAR1 1.50E-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1293 - - ahf:112778948 953.74