Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1282 ATGGGTGTTCTTCACTTTACACTCCTCTGCTTCATTTTACTACATTCATGGAAGATTGCAGCTTATAATGATGAAGATTGGAAGAAAGCCACTGCAACATTCACCAAAGACACTGATGAAGGATCTCTCGTTACTGAAGGAGCTTGTGGCTATGGAGATATTCACAAGGCAAGTTATGGAAAACACAGTGCTGGATTGAGCAGCATTTTGTTCAACAGAGGGAGTGCTTGTGGGGCTTGCTATGAAATCAGGTGTGTTGACCACATCTTGTGGTGTGGGGAATTGTGTCTTATTCCCAACAGTGTTATGGGAAGCCCTTCTATTGTTGTCACTGCTACAGATTTCTGTGCTCCAAATTATGGCCTCTCAGTTGATTATGGTGGATGGTGCAACTTTCCAAGAGAGCATTTTGAGATGTCACATGCCGCATTTGCCCAAATTGCAAAGAGTAAAGCTGATATTGTTCCAGTTCAGTATAGAAGAGTGAAGTGTCAAAGAAGTGGTGGCCTAAAATACACAATGAGTGGAAATTCTCACTTCTATCAAGTTCTGGTAACCAATGTAGGACTTGATGGTGAGGTGGTTGCTATGAAAGTGAAGGGATCTAGAACAGGGTGGATCCCAATGGCAAGGAACTGGGGACAAAACTGGCATTGCAATGTCAATCTTCAGCGACAACCTTTGTCATTCGAGGTAACTGTCAGCAGTGGAAAAACATTAACATCTTACAATGTTGCCCCTGCGAATTGGCAATTTTTGCAGACATTTGAAGGAAAACAGTTTTCAGAATGA 792 0.423 MGVLHFTLLCFILLHSWKIAAYNDEDWKKATATFTKDTDEGSLVTEGACGYGDIHKASYGKHSAGLSSILFNRGSACGACYEIRCVDHILWCGELCLIPNSVMGSPSIVVTATDFCAPNYGLSVDYGGWCNFPREHFEMSHAAFAQIAKSKADIVPVQYRRVKCQRSGGLKYTMSGNSHFYQVLVTNVGLDGEVVAMKVKGSRTGWIPMARNWGQNWHCNVNLQRQPLSFEVTVSSGKTLTSYNVAPANWQFLQTFEGKQFSE* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1282 263 Pfam Expansin C-terminal domain 172 247 IPR007117 -
Ahy3g1282 263 SMART dpbb_1 63 159 IPR007112 -
Ahy3g1282 263 Pfam Lytic transglycolase 64 159 IPR009009 -
Ahy3g1282 263 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Ahy3g1282 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Ahy3g1282 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Ahy3g1282 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Ahy3g1282 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Ahy3g1282 263 Gene3D - 170 261 IPR036749 -
Ahy3g1282 263 PANTHER EXPANSIN-A20 4 262 - -
Ahy3g1282 263 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Ahy3g1282 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Ahy3g1282 263 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Ahy3g1282 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Ahy3g1282 263 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Ahy3g1282 263 Gene3D - 13 165 IPR036908 -
Ahy3g1282 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Ahy3g1282 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 169 IPR007112 -
Ahy3g1282 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Ahy3g1282 263 SUPERFAMILY Barwin-like endoglucanases 26 187 IPR036908 -
Ahy3g1282 263 PANTHER EXPANSIN-A15 4 262 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1282 Ahy-Chr3 20574594 20578415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1282 9 261 Expansin Gene Family AT4G38210 59.843 2.34e-116 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1282 - - ahf:112789777 553.903