Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1223 ATGGTTAGAACACCTTCTTGTGACAAGAGTGGATTGAGGAAAGGTACTTGGACTCCTGAGGAAGATAGGAAGTTAATTGCCTATGTTACTAGGTATGGTAGCTGGAATTGGCGCCAATTGCCTAAGTTTGCAGGACTGGCTAGGTGTGGGAAAAGTTGTAGATTGAGGTGGATGAATTACCTAAGGCCTAATCTCAAAAGAGGGAACTTCAATCAAGAGGAAGAAGCTTGCATAATCAAATTGCATTCTAAACTTGGAAATAGATGGTCTGCCATTGCTGCGGAACTACCTGGAAGAACTGATAACGAAATCAAGAACCATTGGCACACCACACTCAAGAAGCGCTTCCAAACCAATGAAGAAGAATCCGAAACCGCCACCAAATCCAAACCCAAAGAAACTACTCAGATCTCAGCAGAGAGCAACACTACTACTACTACTACTACTTCACCATTATCACCATTGTCATCTTCAAGTGAATTTTCCTCCATAACTTCCTGGGATCAAAGTCACAATAATAATAATAATAAGAACAATCTGGTTCTTGAAGACGACGATTTCGCTTTTCTGGATGGAAGTTTCTGGACAGAACCATATCTTGCTGAAATCTTGCATGAACAAGAAACAGTAGTAACAGTGCCTAGTAGTACTAGCAATGTGTTTGATCCTTGTGAAATCTCAGTGGCCAATGAAAATGAAGAGTTGGAATTATCATCCAACAACAGTACGTCAAGTTTGTTTGATCTGGAGAAAGAGTTTGGGAGCTTCTTGATTGAACCAACAATGATGGAAAGTTTTTGGACCCAGCCATGTGTGTCTGAATCTGATGACGTGTCCCACATTCCTTTTATGCCTCCATCATCTGAATACTTTACAACGCTGTGTGGGTCAGATCCTTGGAGCACTCCAAGTACTACTCATTTGTATGATCAACATCTTAGCTTATTCCATTGA 954 0.4088 MVRTPSCDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNFNQEEEACIIKLHSKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRFQTNEEESETATKSKPKETTQISAESNTTTTTTTSPLSPLSSSSEFSSITSWDQSHNNNNNKNNLVLEDDDFAFLDGSFWTEPYLAEILHEQETVVTVPSSTSNVFDPCEISVANENEELELSSNNSTSSLFDLEKEFGSFLIEPTMMESFWTQPCVSESDDVSHIPFMPPSSEYFTTLCGSDPWSTPSTTHLYDQHLSLFH* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1223 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ahy3g1223 317 CDD SANT 69 112 IPR001005 -
Ahy3g1223 317 MobiDBLite consensus disorder prediction 114 129 - -
Ahy3g1223 317 CDD SANT 16 61 IPR001005 -
Ahy3g1223 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ahy3g1223 317 MobiDBLite consensus disorder prediction 130 167 - -
Ahy3g1223 317 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 234 - -
Ahy3g1223 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ahy3g1223 317 Gene3D - 6 67 - -
Ahy3g1223 317 MobiDBLite consensus disorder prediction 114 167 - -
Ahy3g1223 317 SMART sant 66 114 IPR001005 -
Ahy3g1223 317 SMART sant 13 63 IPR001005 -
Ahy3g1223 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Ahy3g1223 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ahy3g1223 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ahy3g1223 317 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ahy3g1223 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ahy3g1223 317 Gene3D - 69 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1223 Ahy-Chr3 19218716 19220079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1223 1 197 MYB Transcription Factor Family AT2G31180 52.020 2.64e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy3g1223 Myb_DNA-binding 8.20E-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1223 K09422 - gmx:100777107 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy18g0802 18 9295712 9297074 Ahy3g1223 3 19218716 19220079 PCT
Ahy8g1572 8 32657684 32658954 Ahy3g1223 3 19218716 19220079 PCT
Ahy3g1223 3 19218716 19220079 Ahy18g0805 18 9332879 9334754 PCT
Ahy3g1223 3 19218716 19220079 Ahy8g1573 8 32695413 32697963 PCT