Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1176 ATGGATCACAGAAACAATCCCAAGGACTCGCTCTCCTATTCCAATCTCTTCAATCTCGAGCCTTTGATGAACTTTCAACTTCCACAACGAGATGATGATTTTGGTTATTACGGGAATAGTAGTCAGGATGATGAGAGCAGAGATAGCCGAGGTGGTGGGGCAATGGCAAGTCACAGTAATGGGAATGTGAATGCGAACGGAAGGGAGGTAAATTTGTTGAAGAGAGGATGGTCTCAAAACAGTGACGAGGAAGAAAGGAGTCGGTTTTATGGAACATGTATCACAGAGGAGCGATATAGATCGATGCTTGGAGAGCATGTCCAGAAATACAAGAGGAGGTTTAAGGACACCTCATCTACTCATGCCCAAAATCAGGTTGCTGTTCCACCTGTCCAAAGTAGCAGTGGCTCAAAAGCTCGAAAGTCTGGGAATGATCACTATGGAGGACTGCATGCTGCAGAGATTGCATCTGAATGGCTATATGATTCCAATTCTCAGAAACCAGGAAACTACCATGATGCTAATTTCCTGCAGCGATATGCCTCTGATAGGACTATGTATGAACCTGCTTCTTTGGACATTACTGATGGTATCTCTTATAAGATTCCTCCAAAATATGATAAGCTAGCTTCAATGCTGAACCTGCCAAACTTCTCAGATATCCATGTAGATGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGGTGGCTACTGATAAAAGGTTCATGACTACAAACCGAGGAGGCATGGGGGAGCCTATGTCCCAATATGACTCACTTCAGGCACGCTTGAAGGCCATGTCCGCTTCTAATTCACCTCATAAGTTCAGTCTGAAAGTGTCCAATGTCGGTTTAAATTCCTTCATCCCAGAGGGGGCAGCTGGAAACATAAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTTAAGGTTTTGGAAAAAGGTGATACTTATGAGATAATTGAGCGAAGCCTACCTAAGAAGCAAAAGGTGAAAAAAGATCCTGCTTTGATTGAGAAGGAGGAAAGGGACAGAATTGGTAAGATTTGGGTAAACATTGTCAGAAGAGACGTTCCAAAACATCATAGGAATTTCACAATTTTTCATCGAAAGCAACTAATGGATGCCAAGAGGTTCTCAGAGAATTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCACTTAGATGGACTCGGGGTGCCAGCATTCGCACCCGCAAACTAGCTAGAGACATGTTGTTTTTCTGGAAACGAGCTGATAAGGAGATGATTGAATTGAGAAAAAGAGAGGAAAAAGAAGCTGCTGAAGCATTGAGGCGTGAACAGGAGCTTCGAGAAGCTAAGAGGCAACAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTCTACAGTCACTTCATGCAGAACAAATCAAGCTTATTATCTTCAGAGGCTTTACCAATGGAAGATGAAAAAGCAGATGATCAAGATGCACTTTTTGACTCTTCAGATGCTGGCCCGATTGAGGATGATCCTGAAGAGGCTGAATTGAAAAAGGAAGCTCTGAAGGCTGCTCAAGAAGCTGTCTCCAAACAAAGAAAGTTGACAAGTGCTTTCGACAGTGAATGCCTGAGGCTGCGCCAGGCTGGTGAAGCTGATCCACTTTCACAGGAGGTAGCAGGAGCGAGTGACATTGATTTGCAAACTCCCTCAACTATGCCTGTGGCATCTACAGTTCAGACACCAGAATTATTTAAAGGTTGTCTAAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCTGATGAGATGGGACTTGGAAAGACAATTCAGGCTATGGTATTTTTGGCCCATTTAGCTGAGGAGAAAAATATATGGGGGCCTTTTCTGGTTGTTGCACCTGCATCTGTTTTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAACTCAAGAGACTTCCTTATTGGGGAGGTGTTGCCGAGCGATCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTATATCGTAGGGACGCTAAATTCCACATTGTCATCACTAGCTATCAGCTGTTAGTACAAGACGAGAAGTTTTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAGGCTCAAGCAATAAAAAATTCAACCAGCATAAGATGGAAGACACTCCTTAGCTTTAATTGTCGGAATCGCCTTCTTCTTACTGGCACACCTATTCAGAATAATATGGCAGAGCTGTGGGCTCTTCTGCACTTCATTATGCCAACTTTATTTGATAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGCATTGAGAACCACGCAGAACATGGTGGCACCTTGAATGAGCATCAACTGAATAGATTGCACTCAATTCTGAAGCCTTTCATGTTGCGGCGCGTTAAAAAGGATGTAGTTTCTGAGCTGACTAAGAAAACTGAGGTTATGGTGCATTGCAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAACTTTTCGATAGTAATCGTGGGCAACTCAACGAGAAGAAAATCCTGAATCTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAGGGTAGCACATACTTCTATTTTGCAGAGATTCCAAATTCCCTTCCACCTCCCCCATTTGGGGAGTTGGAGGACATATACTATCCTGGAGGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTACCAAGAGATTATGCAAAGATCTGAGACTTTCTGTTCGACTGTTGGTCATGGTGTCTGCAGAGAATCTTTTCAGAAACATTTCAACATTTTTACACCGGAAAATATTTATCGCTCTATGATCTCGGAAGGTGTGGTTGTTAATAGCGGAAACTTTGGTTTTACTCGTTTGGTGGATTTGTCTCCACAAGAGGTGACATTTCTGGCCAGTAGTTCTTTCTTGGAGAGACTATTGTTTTCTATGATGAGATGGGAACGTAAATTCCTTGATGAATTTATAGACTTTCTTATGGAGACCACAGTAAGTGATCCTGAATGTAGTTACCTGGAAAAAGGAACAGTGAGAGCTGTTACTAGAATGTTATTATTGCCATCAAGATCCGAGGCTCAGTTTCTTGAACGAAGGTTTGCAACCGGGCCCACCTGTGATCCTTTTGAGGCTTTGGTCATCTCCCATCAGCATAGACTTTTATCCAATGCAAGGCTTCTTCATGCAGCTTACACATATATCCCACCGACTAGAGCTCCACCAATTGCTGCTCATTGCCCAGATCGTAACTTCTCCTATAAAATGATTGAAGAATTGCACGATCCTTGGGTTAAGAGGTTGTTTGTAGGATTTGCGCGTACATCTGAATCTACTGGGCCTAGAAAGCCTGTTCGTTCTCCTCATCATTTAATTGAAGAGATTGATTCTGAACTACCTATTTCACACCCTGCACTTAAGTTCACACATGAAGTTTTTGGCTGTTCACCTCCGATGCATAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATACTATTGAAACGCTTGCGAGCAGGAAATCATCGTGTTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGATTATATGAACTATAGAAAATATAAGTATTTTCGACTTGACGGGTCATCTACTATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAGGACAGGAGTGATGTATTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTAGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAAAGTGACTGGAATCCAACGTTGGATCTGCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATACTTCTTAGAGCAAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCTCCAGAGGATGTCGTATCTTTGCTTTTGGATGATGTCCAACTTGAACAGAAATTAAAGGAAATCCCGATTCAGGTAAAGGATAAGGAAAAGAAAAAGAAACCAACTAAGGGTATCCGTGTAAATGAAGATGGTGATGCATCTCTGGAGGATCTAACAAACTCTACAGCCCAGGGTACTACAGATTTTGATCTTCCGATGGACCCAGAGGGATCAAACGCCAGTAATAAAAAGAGAAAAGCTGCTTCCAGACCAAGGAATTCTCAAAAGCCAAGTGAATCTGGCATTATGGCTATAGATTATGAATTGGATGATAACCACCTAACTACTGAACCAGTGAGCCACAAACCAAAGAGACCCAAACGGATGAAGAATGTAAATGAAAAGTTTGAAGAGTCTTTTACTGCATCGGCTACCATATTCCCAGAGAAGACTTAA 4533 0.4191 MDHRNNPKDSLSYSNLFNLEPLMNFQLPQRDDDFGYYGNSSQDDESRDSRGGGAMASHSNGNVNANGREVNLLKRGWSQNSDEEERSRFYGTCITEERYRSMLGEHVQKYKRRFKDTSSTHAQNQVAVPPVQSSSGSKARKSGNDHYGGLHAAEIASEWLYDSNSQKPGNYHDANFLQRYASDRTMYEPASLDITDGISYKIPPKYDKLASMLNLPNFSDIHVDEFYLKGTLDLGSLAAMVATDKRFMTTNRGGMGEPMSQYDSLQARLKAMSASNSPHKFSLKVSNVGLNSFIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEERDRIGKIWVNIVRRDVPKHHRNFTIFHRKQLMDAKRFSENCQREVRMKVSRSLRWTRGASIRTRKLARDMLFFWKRADKEMIELRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSLLSSEALPMEDEKADDQDALFDSSDAGPIEDDPEEAELKKEALKAAQEAVSKQRKLTSAFDSECLRLRQAGEADPLSQEVAGASDIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRRDAKFHIVITSYQLLVQDEKFFRRVKWQYMVLDEAQAIKNSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTKKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYFYFAEIPNSLPPPPFGELEDIYYPGGHNPISYEMPKLVYQEIMQRSETFCSTVGHGVCRESFQKHFNIFTPENIYRSMISEGVVVNSGNFGFTRLVDLSPQEVTFLASSSFLERLLFSMMRWERKFLDEFIDFLMETTVSDPECSYLEKGTVRAVTRMLLLPSRSEAQFLERRFATGPTCDPFEALVISHQHRLLSNARLLHAAYTYIPPTRAPPIAAHCPDRNFSYKMIEELHDPWVKRLFVGFARTSESTGPRKPVRSPHHLIEEIDSELPISHPALKFTHEVFGCSPPMHNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQDRSDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPIQVKDKEKKKKPTKGIRVNEDGDASLEDLTNSTAQGTTDFDLPMDPEGSNASNKKRKAASRPRNSQKPSESGIMAIDYELDDNHLTTEPVSHKPKRPKRMKNVNEKFEESFTASATIFPEKT* 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1176 1510 Coils Coil 430 469 - -
Ahy3g1176 1510 MobiDBLite consensus disorder prediction 1394 1412 - -
Ahy3g1176 1510 MobiDBLite consensus disorder prediction 1413 1427 - -
Ahy3g1176 1510 PANTHER HELICASE SRCAP-RELATED 17 1497 - -
Ahy3g1176 1510 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1497 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Ahy3g1176 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 820 IPR027417 -
Ahy3g1176 1510 Pfam DNA-binding domain 354 481 IPR020838 GO:0003677
Ahy3g1176 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 822 1388 IPR027417 -
Ahy3g1176 1510 SMART helicmild6 1237 1320 IPR001650 -
Ahy3g1176 1510 CDD SF2_C_SNF 1199 1331 - -
Ahy3g1176 1510 Pfam SNF2-related domain 607 894 IPR000330 GO:0005524|GO:0140658
Ahy3g1176 1510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 775 IPR014001 -
Ahy3g1176 1510 SMART ultradead3 588 783 IPR014001 -
Ahy3g1176 1510 MobiDBLite consensus disorder prediction 1394 1492 - -
Ahy3g1176 1510 Gene3D - 1175 1426 IPR027417 -
Ahy3g1176 1510 ProSiteProfiles DBINO domain profile. 358 483 IPR020838 GO:0003677
Ahy3g1176 1510 MobiDBLite consensus disorder prediction 119 141 - -
Ahy3g1176 1510 MobiDBLite consensus disorder prediction 117 145 - -
Ahy3g1176 1510 MobiDBLite consensus disorder prediction 30 66 - -
Ahy3g1176 1510 Gene3D - 565 845 IPR038718 -
Ahy3g1176 1510 Pfam Helicase conserved C-terminal domain 1211 1320 IPR001650 -
Ahy3g1176 1510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1211 1395 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1176 Ahy-Chr3 17327855 17340023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1176 645 893 RAD5 or RAD16-like Gene Family AT1G61140 23.548 2.22e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy3g1176 SNF2_N 4.90E-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1176 K11665 - gmx:100780615 2410.95