Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1157 ATGAGATTTGAGAGGATCATGGAATTTGAAACACTATGTGAGTGCTGTGGGGTTGCAAGAGCCATTGTTTATTGCAAATCAGATTCTGCACGTTTGTGCATGGATTGTGATGTGTCCGTACACAGTGCAAATTGTTTATCTATGAGGCACCTTCGTTCTCTCTTATGTGACAGGTGCAATTCCGAAGCAGCAATTGTTCATTGCATTGAGGAAAAGTTGTCATTTTGCCAAGGTTGTTGTGAATTGAACCAAAATGGGTGTTCAATTTTGGGACACAGGCTTCAATCCTTGAATTGTTACAAAGGTTGTCCCAATTTCACTGATTTGCCTGGCTTGTTCTCCTTTGTTCTCGATGATTATTCCTGTTCAAGTGGTTTGGACCATAATGGTGGCGGCAGCGGATCAATTGACACATCATTGCCTAGAAGTGAAAGCTGCAATAGCAAGTGTTTGGAGCAGCTTGTTAACACTATTAACAATGATGGCAATTTCGGTTTTGTTAATGAAAAGTTGAAGGAAACAGAACCATGTGTCAAATTTGAGCCTTGGATGGAGCAATCTTTGAGTTCCGGCATTCCTCCATCAAATGCAAACTACATGTCAATGCCATACTCTGGTGACCAAGCAATCTTCCTTCCAAACCTTCCAAAGGCTGGTGGATCAGCTAGCGAGATGTATGGAATCAACAGCAATGAGAATTGTGTGCTTATGCCTCCTAGCTGCAATGAAAACAGCAATCTGGGATTCTCAAAGGGTGGTCAACTCTATTCAAGCATGTCACTTCCACTTCCTAACGGCGAGAGTGAAATTGGTGCTACAGATTATCAAGATTCTGGTTTGTCATCGATGTTCCCGATAGGTGATTTGTCTATGGAACCAATCTCAAAGGGTACATGCCAGCAAGCTCGGGAGAAAGCAAAATTGAGATTAAATGAGAAAAAGAAAAATCTAAGGTTTGGTAAGCAAATAAGATATGAATCTCGCAAAGCAAGGGCTGATTCGAGAAAACGTGTGAAAGGTAGATTTGTGAAAGCAGGCGAAGCATATGATTACGATCCTAAGAAGACAAGGAGCCTCTAA 1080 0.4157 MRFERIMEFETLCECCGVARAIVYCKSDSARLCMDCDVSVHSANCLSMRHLRSLLCDRCNSEAAIVHCIEEKLSFCQGCCELNQNGCSILGHRLQSLNCYKGCPNFTDLPGLFSFVLDDYSCSSGLDHNGGGSGSIDTSLPRSESCNSKCLEQLVNTINNDGNFGFVNEKLKETEPCVKFEPWMEQSLSSGIPPSNANYMSMPYSGDQAIFLPNLPKAGGSASEMYGINSNENCVLMPPSCNENSNLGFSKGGQLYSSMSLPLPNGESEIGATDYQDSGLSSMFPIGDLSMEPISKGTCQQAREKAKLRLNEKKKNLRFGKQIRYESRKARADSRKRVKGRFVKAGEAYDYDPKKTRSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1157 359 CDD Bbox1_BBX-like 12 55 - -
Ahy3g1157 359 ProSiteProfiles Zinc finger B-box type profile. 8 55 IPR000315 GO:0008270
Ahy3g1157 359 ProSiteProfiles CCT domain profile. 303 345 IPR010402 GO:0005515
Ahy3g1157 359 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 12 354 - -
Ahy3g1157 359 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 12 354 - -
Ahy3g1157 359 SMART bboxneu5 8 55 IPR000315 GO:0008270
Ahy3g1157 359 Pfam CCT motif 303 345 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1157 Ahy-Chr3 16366052 16370404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1157 9 353 C2C2-CO-like Transcription Factor Family AT3G21880 38.043 2.54e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ahy3g1157 CCT 1.50E-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1157 - - ahf:112737556 461.455