Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy3g1128 ATGGAGGCTCTTGGTACCGTGGATGACCTCTTGGATTTCTCATCCGACGTAGGTGAGGATAATGATGTTGTTGACAGACGCAGGAAAGGATTTCCTTGTAACCCAGAATGCAAACAACCTTCATTCACTCCGTTGGCCATGGATGATCCTAACTATTCATTCTCTGAGTTCGCCGAGGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCTGTCGAAACATTTGTCGACATACCATCTATTCGGCCTAACATGTCAAAGCACCAAGGGACAGCCTCAGTGCTTGAATATAGAAGGAGCATCCCCAATAATAACTGCACTAACAACATTACACTCTTAAACGGCTTTGATCACCTGAAGGTCCCTGTCCGAGCAAGGAGCAAGTGCCGTAGTAGGCCTCGCCTGGCTATTGCTGATGTCTCAAGTCATCAGTCCTGGTGGAGACTATCTAGTAGAGAAATTTCCGGAGCAGAAGTGATAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAGAAACTCCACAGTGGCGATCCGGTCCGCTTGGGCCAAAAACACTTTGTAATGCCTGTGGGGTTAGGTTCAAGTCTGGTCGGCTCGTCCCGGAGTACCGTCCTGCAACCAGCCCAACTTTTCGTCACGAGTTGCATTCTAATTCCCATAGGAAGATTATCGAGATGAGGAAGCAGAAGCAAATGGGAATGGTTTGA 726 0.4752 MEALGTVDDLLDFSSDVGEDNDVVDRRRKGFPCNPECKQPSFTPLAMDDPNYSFSEFAEEELEWLSNKDAFPAVETFVDIPSIRPNMSKHQGTASVLEYRRSIPNNNCTNNITLLNGFDHLKVPVRARSKCRSRPRLAIADVSSHQSWWRLSSREISGAEVIKIPTIGRKCQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRLVPEYRPATSPTFRHELHSNSHRKIIEMRKQKQMGMV* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy3g1128 241 Gene3D - 166 238 IPR013088 GO:0006355|GO:0008270
Ahy3g1128 241 SMART GATA_3 165 215 IPR000679 GO:0006355|GO:0043565
Ahy3g1128 241 ProSitePatterns GATA-type zinc finger domain. 171 196 IPR000679 GO:0006355|GO:0043565
Ahy3g1128 241 PANTHER GATA TRANSCRIPTION FACTOR 7 237 - -
Ahy3g1128 241 Pfam GATA zinc finger 171 204 IPR000679 GO:0006355|GO:0043565
Ahy3g1128 241 CDD ZnF_GATA 170 218 IPR000679 GO:0006355|GO:0043565
Ahy3g1128 241 ProSiteProfiles GATA-type zinc finger domain profile. 165 201 IPR000679 GO:0006355|GO:0043565
Ahy3g1128 241 PANTHER GATA TRANSCRIPTION FACTOR 1 7 237 - -
Ahy3g1128 241 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 167 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy3g1128 Ahy-Chr3 14789714 14793169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy3g1128 7 238 C2C2-Gata Transcription Factor Family AT4G32890 38.697 2.91e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy3g1128 GATA 9.50E-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy3g1128 - - ahf:112789633 493.812