Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy3g1055 | ATGACTGATATAAGGAAGTGGTTCATGAAATCGCACGACAAGGGCAATGCCAATGCCTCCTCCAAGCCCGCCACCGATAAACCCCAGAATGACAAACCGGCGTCTGGAGGTCAAGAAAGTTCGGGGAGGAGGAAAACTAGCAAATATTTTTCTACAGACAAACAAAAGGCAAAAGATGAAAAAGAAACACTGGAGCTCCCTGCTAAACGAAAGAATATAAAGGACAGTGGAGAACTACCAGAGGCCCGTACTTCGAAGAAGATTCATGAAGCTGAAGAAGATGACGAAGATGACTATGCTTTGCCAAAAACTAAAAAAAGTTCAGCTCATGCCACTCCAACAAAGAAACTGAAGAGTGGATCTGGTAGGGGGATCCCGCAGAAATCTGTAGAGTTAGAAGAAAATGATGAAGATGACGAGAAAGAAGCTGTGGCATCAGTTAAATCTGCCGGAAGAGGTCGTGGTGGTAGAGGAGCATCGGCACAACCATCTGGTGGGAGGGGTAGAGGTGGTGGTGGTAGGGGTGGGTTCATGAATTTTGGAGAAAGAAAAGATCCTCCACATAAAGGAGAAAAGGAAGTCCCTGAAGATGCTCCTGACTGTTTAGCTGGCCTAACTTTTGTGATCAGCGGAACGCTGGATAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAGCGCCATGGTGGTCGTGTCACGGGATCAGTCAGCAAGAAAACGAATTATCTACTATGTGATGAAGATATTGGTGGACGAAAGTCTGAAAAAGCCAAAGAGCTTGGAACTAAATTTCTCACGGAGGATGGATTGTTTGATATGATTCGGGCATCAAAACCGGCAAAAGCTCCTTCACAAGAGCCCAAAAAGTCTGTCAATAATAAGCCTGCTACTAATGCATCACAGTCAAAAAGTCCCGCAAAAGCAGAACCTAAGCCCTCTCTATCTTCACGGCTGCCTTCTACCCAAGCTAAGGCAAAGACAGCATCTACTGTTCACTCTCCTTTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATGTGATAGGGAATCAGTCACTTGTTTCACAGCTCAGAAATTGGTTGAAAACTTGGAACGAGCAATTTCTTGGCACTGGCAGTAAAAAAAAGGGAAAAAAGCAGAACGAACCCAATTCCAAAAAAGCTGTGCTGTTAAGTGGAACCCCTGGTATAGGGAAAACTACTTCAGCAAAGCTTGTCTGTCAGGAGCTTGGTTTCCAGGCCATAGAGGTAAATGCTAGTGACAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGGATTAGTGGAAGCAATGCAAATTCAATCAAAGAACTTGTAACCAATGAGGCCCTTGGTGCAAATATGGATCGGTCAAAGCTTGCTAGAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTTAACTTCCGGAAACCTACAAAGCAACAGATGGCCAAGAGGTTGATGGATGTTGCAAAGGCAGAAAAGCTTCAAGTTAATGATATTGCTCTGGAGGAACTAGCAGTAAGAGTTAATGGAGATATGCGTATGGCACTGAATCAGTTACAATATATGAGTCTCTCTATGTCGTCTATAAATTACGACGATATCAGGCAGCGCTTTCTTACCAGCTCAAAGGATGAAGACATATCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTACGAAGATGAGAATGGATGACAGGATTAGTCTTAGCATGAGTGATCCGGATCTTGTTCCACTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTAGCTGGTAAGGATGACCAGGGGGTAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCAATTGCTGATGGGGATCTAGTGAATGTACAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTGGCCTCGTGTATTATTCCTGCTTCATTGTTGCATGGGCAGAGAGAAATACTTGAACAGGGAGAGCATAATTTTAACAGGTTCGGCGGGTGGCTTGGAAAGAACTCAACGACAGGCAAAAACCTTAGGCTTATGGAAGATCTGCATGTCCACATACTTGCTTCACGTGAATCTAGTTCAGGAAGGGATATTATCCGATTGGAATACCTTACCCTTCTCCTTAAACAATTAACAGAACCGCTACGATCTCTGCCCAAGGCTGAAGCTGTTGAGAAAGTCGTGGAATTTATGAATACATATTCTATCAGTCAGGAAGACTTCGATACTATTGTAGAGTTGTCAAAATTCAAGGGTCACCCTAATCCATTGGAAGGCGTACAGCCTGCCGTTAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAATCAAGGATGGTTCGAGCTGCGGATCTGGTGAATCTTCCTGGAATAAAGAAGGCCCCTAAGAAGCGCATTGCTGCTATTTTAGAACCAGCTGAAGAAGTAGCAGAGCAGGGCGAAGGTAACACGTTGGATGAGAGTGAAGAGGAGAACAATTCCGACACAGAGGAGTTGGAAGGCAGCAACCCCGGCGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAACTCAAAGGGCATGCAAGTACAGTTAGAGCTGAAGGGTGTGGCGAATTCGAGTTCCAAGAAGGCATCTGGTGGCAAAGGTGGTGCACAGAAGGGTGGCCAAACTTCAAGGGCTGCTCCGAAAAGAAAGAGGTGA | 2841 | 0.4414 | MTDIRKWFMKSHDKGNANASSKPATDKPQNDKPASGGQESSGRRKTSKYFSTDKQKAKDEKETLELPAKRKNIKDSGELPEARTSKKIHEAEEDDEDDYALPKTKKSSAHATPTKKLKSGSGRGIPQKSVELEENDEDDEKEAVASVKSAGRGRGGRGASAQPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEDAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTKFLTEDGLFDMIRASKPAKAPSQEPKKSVNNKPATNASQSKSPAKAEPKPSLSSRLPSTQAKAKTASTVHSPLMWTEKYRPKDPKDVIGNQSLVSQLRNWLKTWNEQFLGTGSKKKGKKQNEPNSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNANSIKELVTNEALGANMDRSKLARTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKRLMDVAKAEKLQVNDIALEELAVRVNGDMRMALNQLQYMSLSMSSINYDDIRQRFLTSSKDEDISPFTAVDKLFGFNATKMRMDDRISLSMSDPDLVPLLIQENYINYRPSLAGKDDQGVKRMNLIARAAESIADGDLVNVQIRRYRQWQLSQTSSVASCIIPASLLHGQREILEQGEHNFNRFGGWLGKNSTTGKNLRLMEDLHVHILASRESSSGRDIIRLEYLTLLLKQLTEPLRSLPKAEAVEKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLEGVQPAVKSALTKAYKEQSKSRMVRAADLVNLPGIKKAPKKRIAAILEPAEEVAEQGEGNTLDESEEENNSDTEELEGSNPGEKLKSELQSLNSKGMQVQLELKGVANSSSKKASGGKGGAQKGGQTSRAAPKRKR* | 947 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy3g1055 | 946 | Pfam | BRCA1 C Terminus (BRCT) domain | 199 | 274 | IPR001357 | - | |
| Ahy3g1055 | 946 | CDD | AAA | 386 | 487 | - | - | |
| Ahy3g1055 | 946 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 16 | 924 | - | - | |
| Ahy3g1055 | 946 | Gene3D | - | 596 | 705 | - | - | |
| Ahy3g1055 | 946 | Pfam | Replication factor RFC1 C terminal domain | 664 | 826 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 860 | 946 | - | - | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 14 | 45 | - | - | |
| Ahy3g1055 | 946 | Gene3D | - | 524 | 594 | - | - | |
| Ahy3g1055 | 946 | CDD | HLD_clamp_RFC | 524 | 582 | - | - | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 1 | 199 | - | - | |
| Ahy3g1055 | 946 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 595 | 740 | IPR008921 | GO:0003677|GO:0006260 | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 894 | 926 | - | - | |
| Ahy3g1055 | 946 | CDD | BRCT_RFC1 | 198 | 275 | - | - | |
| Ahy3g1055 | 946 | ProSiteProfiles | BRCT domain profile. | 197 | 278 | IPR001357 | - | |
| Ahy3g1055 | 946 | SUPERFAMILY | BRCT domain | 196 | 278 | IPR036420 | - | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 278 | 331 | - | - | |
| Ahy3g1055 | 946 | SMART | AAA_5 | 387 | 525 | IPR003593 | - | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 46 | 104 | - | - | |
| Ahy3g1055 | 946 | Pfam | ATPase family associated with various cellular activities (AAA) | 391 | 490 | IPR003959 | GO:0005524|GO:0016887 | |
| Ahy3g1055 | 946 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 335 | 584 | IPR027417 | - | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 286 | 331 | - | - | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 181 | 198 | - | - | |
| Ahy3g1055 | 946 | SMART | BRCT_7 | 199 | 277 | IPR001357 | - | |
| Ahy3g1055 | 946 | Gene3D | - | 335 | 523 | IPR027417 | - | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 867 | 884 | - | - | |
| Ahy3g1055 | 946 | PIRSF | RFC1 | 1 | 927 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Ahy3g1055 | 946 | PANTHER | REPLICATION FACTOR C SUBUNIT 1 | 16 | 924 | - | - | |
| Ahy3g1055 | 946 | MobiDBLite | consensus disorder prediction | 373 | 395 | - | - | |
| Ahy3g1055 | 946 | Gene3D | BRCT domain | 174 | 276 | IPR036420 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy3g1055 | Ahy-Chr3 | 13020419 | 13028490 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy3g1055 | 1 | 906 | Core DNA Replication Machinery Family | AT5G22010 | 68.547 | 0.0 | 1114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy3g1055 | K10754 | - | gmx:100790070 | 1393.25 |